Graziano Pesole

Publication Activity (10 Years)

Years Active: 1993-2023
Publications (10 Years): 19

Top Topics

Motif Discovery

High Performance Computing

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Claudio Lo Giudice, Federico Zambelli, Matteo Chiara, Giulio Pavesi, Marco Antonio Tangaro, Ernesto Picardi, Graziano Pesole
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 51 (D1) (2023)
Marco Antonio Tangaro, Marica Antonacci, Pietro Mandreoli, Daniele Colombo, Nadina Foggetti, Giacinto Donvito, Graziano Pesole, Federico Zambelli
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science. ICWE Workshops (2022)
Bachir Balech, Anna Sandionigi, Marinella Marzano, Graziano Pesole, Monica Santamaria
MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences. Database J. Biol. Databases Curation 2022 (2022) (2022)
Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments. Nucleic Acids Res. 49 (Database-Issue) (2021)
Matteo Chiara, Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David Stephen Horner, Graziano Pesole
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes. Bioinform. 36 (22-23) (2021)
Marco Antonio Tangaro, Giuseppe Defazio, Bruno Fosso, Vito Flavio Licciulli, Giorgio Grillo, Giacinto Donvito, Enrico Lavezzo, Giacomo Baruzzo, Graziano Pesole, Monica Santamaria
ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy. Bioinform. 37 (22) (2021)
Matteo Chiara, Anna Maria D'Erchia, Carmela Gissi, Caterina Manzari, Antonio Parisi, Nicoletta Resta, Federico Zambelli, Ernesto Picardi, Giulio Pavesi, David Stephen Horner, Graziano Pesole
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Briefings Bioinform. 22 (2) (2021)
Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandri, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. (15) (2021)
Matteo Chiara, Pietro Mandreoli, Marco Antonio Tangaro, Anna Maria D'Erchia, Sandro Sorrentino, Cinzia Forleo, David Stephen Horner, Federico Zambelli, Graziano Pesole
VINYL: Variant prIoritizatioN bY survivaL analysis. Bioinform. 36 (24) (2021)
Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Le Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. F1000Research 10 (2021)
Matteo Chiara, Federico Zambelli, Ernesto Picardi, David Stephen Horner, Graziano Pesole
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data. Briefings Bioinform. 21 (6) (2020)
Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. BMC Bioinform. (10) (2020)
Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò
HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis. BMC Bioinform. (10) (2020)
Maria Angela Diroma, Loredana Ciaccia, Graziano Pesole, Ernesto Picardi
Elucidating the editome: bioinformatics approaches for RNA editing detection. Briefings Bioinform. 20 (2) (2019)
Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
Unbiased Taxonomic Annotation of Metagenomic Samples. J. Comput. Biol. 25 (3) (2018)
Monica Santamaria, Bruno Fosso, Flavio Licciulli, Bachir Balech, Ilaria Larini, Giorgio Grillo, Giorgio De Caro, Sabino Liuni, Graziano Pesole
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. Nucleic Acids Res. 46 (Database-Issue) (2018)
Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, G. Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. Bioinform. 33 (11) (2017)
Ernesto Picardi, Anna Maria D'Erchia, Claudio Lo Giudice, Graziano Pesole
REDIportal: a comprehensive database of A-to-I RNA editing events in humans. Nucleic Acids Res. 45 (Database-Issue) (2017)
Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
Unbiased Taxonomic Annotation of Metagenomic Samples. ISBRA (2017)
Bruno Fosso, Monica Santamaria, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. BMC Bioinform. 16 (2015)
Bachir Balech, Saverio Vicario, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole
MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information. Bioinform. 31 (15) (2015)
Vitoantonio Bevilacqua, Nicola Pietroleonardo, Ely Ignazio Giannino, Fabio Stroppa, Domenico Simone, Graziano Pesole, Ernesto Picardi
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads. BMC Bioinform. 15 (S-15) (2014)
Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data. HPCS (2014)
Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing. Bioinform. 30 (21) (2014)
Federico Zambelli, Graziano Pesole, Giulio Pavesi
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. Briefings Bioinform. 14 (2) (2013)
Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. Nucleic Acids Res. 41 (Database-Issue) (2013)
Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò
WEP: a high-performance analysis pipeline for whole-exome data. BMC Bioinform. 14 (S-7) (2013)
Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer. BMC Bioinform. 14 (S-7) (2013)
Federico Zambelli, Graziano Pesole, Giulio Pavesi
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Vitoantonio Bevilacqua, Nicola Pietroleonardo, Ely Ignazio Giannino, Fabio Stroppa, Graziano Pesole, Ernesto Picardi
Clustering and Assembling Large Transcriptome Datasets by EasyCluster2. ICIC (3) (2013)
Ernesto Picardi, Graziano Pesole
REDItools: high-throughput RNA editing detection made easy. Bioinform. 29 (14) (2013)
Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa. Nucleic Acids Res. 40 (Database-Issue) (2012)
Gabriel Valiente, Graziano Pesole
Editorial. Briefings Bioinform. 13 (6) (2012)
Federico Zambelli, Gian Marco Prazzoli, Graziano Pesole, Giulio Pavesi
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole
Reference databases for taxonomic assignment in metagenomics. Briefings Bioinform. 13 (6) (2012)
Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova, Paola Bonizzoni
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text. BMC Bioinform. 13 (S-5) (2012)
Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments. Bioinform. 27 (9) (2011)
Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39 (Database-Issue) (2011)
David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Briefings Bioinform. 11 (2) (2010)
Vitoantonio Bevilacqua, Ernesto Picardi, Graziano Pesole, Daniele Ranieri, Vincenzo Stola, Vito Renò
New Tools for Expression Alternative Splicing Validation. ICIC (3) (2010)
Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 38 (Database-Issue) (2010)
Federico Zambelli, Graziano Pesole, Giulio Pavesi
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Ernesto Picardi, Flavio Mignone, Graziano Pesole
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. BMC Bioinform. 10 (S-6) (2009)
Matteo Re, Graziano Pesole, David Stephen Horner
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics. BMC Bioinform. 10 (2009)
Paola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi
Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach. J. Comput. Biol. 16 (1) (2009)
Teresa Maria Creanza, David Stephen Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements. BMC Bioinform. 10 (S-6) (2009)
David Stephen Horner, Walter Pirovano, Graziano Pesole
Correlated substitution analysis and the prediction of amino acid structural contacts. Briefings Bioinform. 9 (1) (2008)
Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole
GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts. APBC (2008)
Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. CCGRID (2008)
Graziano Pesole, Manuela Helmer-Citterich
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 9 (S-2) (2008)
Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole
ASPicDB: A database resource for alternative splicing analysis. Bioinform. 24 (10) (2008)
Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona
Selection of relevant genes in cancer diagnosis based on their prediction accuracy. Artif. Intell. Medicine 40 (1) (2007)
Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
A high performance grid-web service framework for the identification of 'conserved sequence tags'. Future Gener. Comput. Syst. 23 (3) (2007)
Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel
prediction and microarray data. BMC Bioinform. 8 (S-1) (2007)
Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data. Bioinform. 23 (16) (2007)
Giulio Pavesi, Federico Zambelli, Graziano Pesole
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences. BMC Bioinform. 8 (2007)
Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole
Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 8 (S-1) (2007)
Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Bioinform. 22 (4) (2006)
Nicola Ancona, Rosalia Maglietta, Ada Piepoli, Annarita D'Addabbo, R. Cotugno, M. Savino, Sabino Liuni, Massimo Carella, Graziano Pesole, Francesco Perri
On the statistical assessment of classifiers using DNA microarray data. BMC Bioinform. 7 (2006)
Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona
Classification error as a measure of gene relevance in cancer diagnosis. IJCNN (2006)
Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole
Regularized Least Squares Cancer Classifiers from DNA microarray data. BMC Bioinform. 6 (S-4) (2005)
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. BMC Bioinform. 6 (2005)
Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta
SVM and RLS Models for Cancer Classification. Computational Intelligence (2005)
Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul J. Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 33 (Database-Issue) (2005)
Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinform. 6 (S-4) (2005)
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences. J. Comput. Sci. Technol. 19 (1) (2004)
Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
In silico representation and discovery of transcription factor binding sites. Briefings Bioinform. 5 (3) (2004)
Flavio Mignone, David Stephen Horner, Graziano Pesole
WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments. Bioinform. 20 (8) (2004)
Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. Bioinform. 20 (18) (2004)
Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
David Stephen Horner, Graziano Pesole
The estimation of relative site variability among aligned homologous protein sequences. Bioinform. 19 (5) (2003)
Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Res. 31 (13) (2003)
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. ICTAI (2003)
Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi
A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. WABI (2003)
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res. 30 (1) (2002)
Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone
Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs. Comput. Chem. 26 (5) (2002)
Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. Nucleic Acids Res. 30 (1) (2002)
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
An algorithm for finding signals of unknown length in DNA sequences. ISMB (Supplement of Bioinformatics) (2001)
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
Methods for Pattern Discovery in Unaligned Biological Sequences. Briefings Bioinform. 2 (4) (2001)
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 28 (1) (2000)
Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni
The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. Briefings Bioinform. 1 (3) (2000)
Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. Nucleic Acids Res. 28 (1) (2000)
Graziano Pesole, Sabino Liuni, Mark D'Souza
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. Bioinform. 16 (5) (2000)
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 27 (1) (1999)
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 26 (1) (1998)
Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. Comput. Appl. Biosci. 12 (1) (1996)
Graziano Pesole, Giorgio Grillo, Sabino Liuni
Databases of MRNA Untranslated Regions for Metazoa. Comput. Chem. 20 (1) (1996)
Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences. Comput. Appl. Biosci. 9 (6) (1993)
N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole
FASTPAT: a fast and efficient algorithm for string searching in DNA sequences. Comput. Appl. Biosci. 9 (5) (1993)