Raffaele A. Calogero

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 11

Top Topics

Corpus Callosum

Multiple Sclerosis

Computational Biology

Top Venues

Publications

Simone Alessandri, Maria L. Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandrì
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications. BMC Bioinform. 25 (1) (2024)
Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Francesco Sassi, Luca Alessandrì, Dora Tortarolo, Raffaele A. Calogero, Livio Trusolino, Andrea Bertotti, Marco Beccuti, Martina Olivero, Francesca Cordero
CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system. Bioinform. 39 (5) (2023)
Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandri, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. (15) (2021)
Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
Multiple Sclerosis disease: a computational approach for investigating its drug interactions. CoRR (2020)
Francesca Cordero, Raffaele A. Calogero, Michele Caselle
BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. (9) (2019)
Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions. CIBB (2019)
Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero
A computational approach based on the colored Petri net formalism for studying multiple sclerosis. BMC Bioinform. (6) (2019)
Greta Romano, Elisa Genuardi, Raffaele A. Calogero, Simone Ferrero
ParallelHashClone: A Parallel Implementation of HashClone Suite for Clonality Assessment from NGS Data. PDP (2018)
Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele A. Calogero
Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines. BMC Bioinform. (10) (2018)
Marco Beccuti, Francesca Cordero, Maddalena Arigoni, Riccardo Panero, Elvio Gilberto Amparore, Susanna Donatelli, Raffaele A. Calogero
SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer. Bioinform. 34 (5) (2018)
Marco Beccuti, Elisa Genuardi, Greta Romano, Luigia Monitillo, Daniela Barbero, Mario Boccadoro, Marco Ladetto, Raffaele A. Calogero, Simone Ferrero, Francesca Cordero
HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data. BMC Bioinform. 18 (1) (2017)
Chiara Fornari, Gianfranco Balbo, Sami M. Halawani, Omar M. Ba-Rukab, Ab Rahman Ahmad, Raffaele A. Calogero, Francesca Cordero, Marco Beccuti
A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression. BMC Syst. Biol. 9 (S-3) (2015)
Matteo Carrara, Josephine Lum, Francesca Cordero, Marco Beccuti, Michael Poidinger, Susanna Donatelli, Raffaele A. Calogero, Francesca Zolezzi
Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis. BMC Bioinform. 16 (S-9) (2015)
Marco Beccuti, Matteo Carrara, Francesca Cordero, Fulvio Lazzarato, Susanna Donatelli, Francesca Nadalin, Alberto Policriti, Raffaele A. Calogero
Chimera: a Bioconductor package for secondary analysis of fusion products. Bioinform. 30 (24) (2014)
Francesca Cordero, Marco Beccuti, Chiara Fornari, Stefania Lanzardo, Laura Conti, Federica Cavallo, Gianfranco Balbo, Raffaele A. Calogero
Multi-level model for the investigation of oncoantigen-driven vaccination effect. BMC Bioinform. 14 (S-6) (2013)
Matteo Carrara, Marco Beccuti, Federica Cavallo, Susanna Donatelli, Fulvio Lazzarato, Francesca Cordero, Raffaele A. Calogero
State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues? BMC Bioinform. 14 (S-7) (2013)
Matteo Carrara, Federica Cavallo, Maddalena Arigoni, Raffaele A. Calogero
Digging in the RNA-seq Garbage: Evaluating the Characteristics of Unmapped RNA-seq Reads in Normal Tissues. CISIS (2012)
Francesca Cordero, Stefania Lanzardo, Maddalena Arigoni, Chiara Fornari, Laura Conti, Gianfranco Balbo, Federica Cavallo, Daniele Manini, Raffaele A. Calogero
Cancer stem cell based adjuvant for oncoantingen-driven vaccination. BCB (2011)
Chiara Fornari, Francesca Cordero, Daniele Manini, Gianfranco Balbo, Raffaele A. Calogero
Mathematical Approach to Predict the Drug Effects on Cancer Stem Cell Models. Electron. Notes Theor. Comput. Sci. 277 (2011)
Alessia Visconti, Francesca Cordero, Marco Botta, Raffaele A. Calogero
Gene Ontology Rewritten for Computing Gene Functional Similarity. CISIS (2010)
Silvia C. Lenzken, Silvia Vivarelli, Francesca Zolezzi, Francesca Cordero, Cristina Della Beffa, Raffaele A. Calogero, Silvia Barabino
Genome-Wide Search for Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS). CISIS (2009)
Remo Sanges, Francesca Cordero, Raffaele A. Calogero
oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language. Bioinform. 23 (24) (2007)
Daniela Bianchi, Raffaele A. Calogero, Brunello Tirozzi
Kohonen neural networks and genetic classification. Math. Comput. Model. 45 (1-2) (2007)
Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele A. Calogero, Antonella Isacchi
Cross platform microarray analysis for robust identification of differentially expressed genes. BMC Bioinform. 8 (S-1) (2007)
Federica Cavallo, Annalisa Astolfi, Manuela Iezzi, Francesca Cordero, Pierluigi Lollini, Guido Forni, Raffaele A. Calogero
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention. BMC Bioinform. 6 (S-4) (2005)
Fulvio Lazzarato, Giuliana Franceschinis, Marco Botta, Francesca Cordero, Raffaele A. Calogero
RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets. Bioinform. 20 (16) (2004)
Maria Carmela Accardo, Ennio Giordano, Sara Riccardo, Filomena Anna Digilio, Giovanni Iazzetti, Raffaele A. Calogero, Maria Furia
genome. Bioinform. 20 (18) (2004)
Giovanni Iazzetti, G. Santini, M. Rau, E. Bucci, Raffaele A. Calogero
VIRTLAB: a virtual molecular biology laboratory. Bioinform. 14 (9) (1998)
Giovanni Iazzetti, Maria Luisa Chiusano, Raffaele A. Calogero
STRIRED: graphical analysis of string repeats. Bioinform. 14 (2) (1998)