Francesca Cordero

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 18

Top Topics

Systems Biology

Gene Expression

Multiple Sclerosis

Top Venues

SIGMETRICS Perform. Evaluation Rev.

Publications

Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Francesco Sassi, Luca Alessandrì, Dora Tortarolo, Raffaele A. Calogero, Livio Trusolino, Andrea Bertotti, Marco Beccuti, Martina Olivero, Francesca Cordero
CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system. Bioinform. 39 (5) (2023)
Dora Tortarolo, Simone Pernice, Fabiana Clapero, Donatella Valdembri, Guido Serini, Federica Riccardo, Lidia Tarone, Chiara Enrico Bena, Carla Bosia, Sandro Gepiro Contaldo, Marco Beccuti, Marzio Pennisi, Francesca Cordero
OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data. BIBM (2023)
Carlo Alberto Barbano, Marco Beccuti, Francesca Cordero, Desislav Nikolaev Ivanov, Nicola Licheri, Simone Pernice, Alberto Presta, Riccardo Renzulli, Marco Grangetto
Artificial intelligence methods for biomedical imaging and omics data. Ital-IA (2023)
Simone Pernice, Alessandro Maglione, Dora Tortarolo, Roberta Sirovich, Marinella Clerico, Simona Rolla, Marco Beccuti, Francesca Cordero
A new computational workflow to guide personalized drug therapy. J. Biomed. Informatics 148 (2023)
Simone Pernice, Laura Follia, Gianfranco Balbo, Luciano Milanesi, Giulia Sartini, Niccoló Totis, Pietro Lió, Ivan Merelli, Francesca Cordero, Marco Beccuti
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice. Fundam. Informaticae 171 (1-4) (2020)
Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
Multiple Sclerosis disease: a computational approach for investigating its drug interactions. CoRR (2020)
Simone Pernice, Laura Follia, Alessandro Maglione, Marzio Pennisi, Francesco Pappalardo, Francesco Novelli, Marinella Clerico, Marco Beccuti, Francesca Cordero, Simona Rolla
Computational modeling of the immune response in multiple sclerosis using epimod framework. BMC Bioinform. (17) (2020)
Francesca Cordero, Raffaele A. Calogero, Michele Caselle
BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. (9) (2019)
Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions. CIBB (2019)
Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero
A computational approach based on the colored Petri net formalism for studying multiple sclerosis. BMC Bioinform. (6) (2019)
Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele A. Calogero
Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines. BMC Bioinform. (10) (2018)
Marco Beccuti, Francesca Cordero, Maddalena Arigoni, Riccardo Panero, Elvio Gilberto Amparore, Susanna Donatelli, Raffaele A. Calogero
SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer. Bioinform. 34 (5) (2018)
Marco Beccuti, Elisa Genuardi, Greta Romano, Luigia Monitillo, Daniela Barbero, Mario Boccadoro, Marco Ladetto, Raffaele A. Calogero, Simone Ferrero, Francesca Cordero
HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data. BMC Bioinform. 18 (1) (2017)
Giorgia Chivassa, Chiara Fornari, Roberta Sirovich, Marzio Pennisi, Marco Beccuti, Francesca Cordero
A mathematical model to study breast cancer growth. BIBM (2017)
Niccoló Totis, Laura Follia, Chiara Riganti, Francesco Novelli, Francesca Cordero, Marco Beccuti
Overcoming the lack of kinetic information in biochemical reactions networks. SIGMETRICS Perform. Evaluation Rev. 44 (4) (2017)
Paolo Romano, Francesca Cordero
Erratum to: 'NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology'. BMC Bioinform. 17 (2016)
Paolo Romano, Francesca Cordero
NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology. BMC Bioinform. 17 (S-4) (2016)
Niccoló Totis, Marco Beccuti, Francesca Cordero, Laura Follia, Chiara Riganti, Francesco Novelli
Dealing with indetermination in biochemical networks. VALUETOOLS (2016)
Chiara Fornari, Gianfranco Balbo, Sami M. Halawani, Omar M. Ba-Rukab, Ab Rahman Ahmad, Raffaele A. Calogero, Francesca Cordero, Marco Beccuti
A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression. BMC Syst. Biol. 9 (S-3) (2015)
Matteo Carrara, Josephine Lum, Francesca Cordero, Marco Beccuti, Michael Poidinger, Susanna Donatelli, Raffaele A. Calogero, Francesca Zolezzi
Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis. BMC Bioinform. 16 (S-9) (2015)
Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi
Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads. WABI (2015)
Francesca Cordero, Chiara Fornari, Marco Gribaudo, Daniele Manini
Markovian Agents Population Models to Study Cancer Evolution. ASMTA (2014)
Alessia Visconti, Francesca Cordero, Ruggero G. Pensa
Leveraging additional knowledge to support coherent bicluster discovery in gene expression data. Intell. Data Anal. 18 (5) (2014)
Marco Beccuti, Matteo Carrara, Francesca Cordero, Fulvio Lazzarato, Susanna Donatelli, Francesca Nadalin, Alberto Policriti, Raffaele A. Calogero
Chimera: a Bioconductor package for secondary analysis of fusion products. Bioinform. 30 (24) (2014)
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close
Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space. PLoS Comput. Biol. 9 (4) (2013)
Ruggero G. Pensa, Francesca Cordero, Céline Rouveirol, Rushed Kanawati
Guest Editorial. Intell. Data Anal. 17 (1) (2013)
Francesca Cordero, Marco Beccuti, Chiara Fornari, Stefania Lanzardo, Laura Conti, Federica Cavallo, Gianfranco Balbo, Raffaele A. Calogero
Multi-level model for the investigation of oncoantigen-driven vaccination effect. BMC Bioinform. 14 (S-6) (2013)
Matteo Carrara, Marco Beccuti, Federica Cavallo, Susanna Donatelli, Fulvio Lazzarato, Francesca Cordero, Raffaele A. Calogero
State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues? BMC Bioinform. 14 (S-7) (2013)
Alessia Visconti, Roberto Esposito, Francesca Cordero
Restructuring the Gene Ontology to emphasise regulative pathways and to improve gene similarity queries. Int. J. Comput. Biol. Drug Des. 4 (3) (2011)
Francesca Cordero, Stefania Lanzardo, Maddalena Arigoni, Chiara Fornari, Laura Conti, Gianfranco Balbo, Federica Cavallo, Daniele Manini, Raffaele A. Calogero
Cancer stem cell based adjuvant for oncoantingen-driven vaccination. BCB (2011)
Francesca Cordero, András Horváth, Daniele Manini, Lucia Napione, Massimiliano De Pierro, Simona Pavan, Andrea Picco, Andrea Veglio, Matteo Sereno, Federico Bussolino, Gianfranco Balbo
Simplification of a complex signal transduction model using invariants and flow equivalent servers. Theor. Comput. Sci. 412 (43) (2011)
Alessia Visconti, Roberto Esposito, Francesca Cordero
Tackling the DREAM Challenge for Gene Regulatory Networks Reverse Engineering. AI*IA (2011)
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close
Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space CoRR (2011)
Chiara Fornari, Francesca Cordero, Daniele Manini, Gianfranco Balbo, Raffaele A. Calogero
Mathematical Approach to Predict the Drug Effects on Cancer Stem Cell Models. Electron. Notes Theor. Comput. Sci. 277 (2011)
Paola Bonfante, Francesca Cordero, Stefano Ghignone, Dino Ienco, Luisa Lanfranco, Giorgio Leonardi, Rosa Meo, Stefania Montani, Luca Roversi, Alessia Visconti
A Modular Database Architecture Enabled to Comparative Sequence Analysis. Trans. Large Scale Data Knowl. Centered Syst. 4 (2011)
Alessia Visconti, Francesca Cordero, Marco Botta, Raffaele A. Calogero
Gene Ontology Rewritten for Computing Gene Functional Similarity. CISIS (2010)
Alessio Angius, Gianfranco Balbo, Francesca Cordero, András Horváth, Daniele Manini
Comparison of Approximate Kinetics for Unireactant Enzymes: Michaelis-Menten against the Equivalent Server. ACSD/Petri Nets Workshops (2010)
Ruggero G. Pensa, Jean-François Boulicaut, Francesca Cordero, Maurizio Atzori
Co-clustering numerical data under user-defined constraints. Stat. Anal. Data Min. 3 (1) (2010)
Francesca Cordero, Ruggero G. Pensa, Alessia Visconti, Dino Ienco, Marco Botta
Ontology-Driven Co-clustering of Gene Expression Data. AI*IA (2009)
Lucia Napione, Daniele Manini, Francesca Cordero, András Horváth, Andrea Picco, Massimiliano De Pierro, Simona Pavan, Matteo Sereno, Andrea Veglio, Federico Bussolino, Gianfranco Balbo
On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction Pathways for Angiogenesis Process. CMSB (2009)
Silvia C. Lenzken, Silvia Vivarelli, Francesca Zolezzi, Francesca Cordero, Cristina Della Beffa, Raffaele A. Calogero, Silvia Barabino
Genome-Wide Search for Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS). CISIS (2009)
Francesca Cordero, Alessia Visconti, Marco Botta
A new protein motif extraction framework based on constrained co-clustering. SAC (2009)
Remo Sanges, Francesca Cordero, Raffaele A. Calogero
oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language. Bioinform. 23 (24) (2007)
Federica Cavallo, Annalisa Astolfi, Manuela Iezzi, Francesca Cordero, Pierluigi Lollini, Guido Forni, Raffaele A. Calogero
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention. BMC Bioinform. 6 (S-4) (2005)
Fulvio Lazzarato, Giuliana Franceschinis, Marco Botta, Francesca Cordero, Raffaele A. Calogero
RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets. Bioinform. 20 (16) (2004)