Timothy J. Close

Publication Activity (10 Years)

Years Active: 2003-2015
Publications (10 Years): 3

Top Topics

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Stefano Lonardi, Seyed Hamid Mirebrahim, Steve Wanamaker, Matthew Alpert, Gianfranco Ciardo, Denisa Duma, Timothy J. Close
assembly quality. Bioinform. 31 (18) (2015)
Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi
meta-assembly of ultra-deep sequencing data. Bioinform. 31 (12) (2015)
Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi
Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads. WABI (2015)
Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi
De novo assembly of ultra-deep sequencing data. BCB (2014)
Rachid Ounit, Timothy J. Close, Steve Wanamaker, Stefano Lonardi
CLARK, accurate and efficient classification of DNA sequences. BCB (2014)
Denisa Duma, Mary Wootters, Anna C. Gilbert, Hung Q. Ngo, Atri Rudra, Matthew Alpert, Timothy J. Close, Gianfranco Ciardo, Stefano Lonardi
Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing. WABI (2013)
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close
Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space. PLoS Comput. Biol. 9 (4) (2013)
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Yonghui Wu, Timothy J. Close, Stefano Lonardi
Accurate Construction of Consensus Genetic Maps via Integer Linear Programming. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close
Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space CoRR (2011)
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
A compartmentalized approach to the assembly of physical maps. BMC Bioinform. 10 (2009)
Yonghui Wu, Lan Liu, Timothy J. Close, Stefano Lonardi
Deconvoluting BAC-Gene Relationships Using a Physical Map. J. Bioinform. Comput. Biol. 6 (3) (2008)
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming. WABI (2008)
Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi
Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data. WABI (2007)
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
A Compartmentalized Approach to the Assembly of Physical Maps. BIBE (2007)
Jie Zheng, Jan T. Svensson, Kavitha Madishetty, Timothy J. Close, Tao Jiang, Stefano Lonardi
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets. BMC Bioinform. 7 (2006)
Xinping Cui, Jin Xu, Rehana Asghar, Pascal Condamine, Jan T. Svensson, Steve Wanamaker, Nils Stein, Mikeal Roose, Timothy J. Close
Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit. Bioinform. 21 (20) (2005)
Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi
Efficient selection of unique and popular oligos for large EST databases. Bioinform. 20 (13) (2004)
Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi
Efficient Selection of Unique and Popular Oligos for Large EST Databases. CPM (2003)