Tao Jiang

ORCID

Publication Activity (10 Years)

Years Active: 1987-2023
Publications (10 Years): 23

Top Venues

Publications

Yuanpeng Xiong, Xuan He, Dan Zhao, Tao Jiang, Jianyang Zeng
DeepRCI: predicting RNA-chromatin interactions via deep learning with multi-omics data. Quant. Biol. 11 (3) (2023)
Zhiwei Hong, Jianxing Feng, Tao Jiang
Truly Unsupervised Image-to-Image Translation with Contrastive Representation Learning. ACCV (3) (2022)
Xuan He, Sai Zhang, Yanqing Zhang, Zhixin Lei, Tao Jiang, Jianyang Zeng
Characterizing RNA Pseudouridylation by Convolutional Neural Networks. Genom. Proteom. Bioinform. 19 (5) (2021)
Dipan Shaw, Hao Chen, Minzhu Xie, Tao Jiang
DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms. BMC Bioinform. 22 (1) (2021)
Hailin Hu, Xianggen Liu, An Xiao, Yangyang Li, Chengdong Zhang, Tao Jiang, Dan Zhao, Sen Song, Jianyang Zeng
Riboexp: an interpretable reinforcement learning framework for ribosome density modeling. Briefings Bioinform. 22 (5) (2021)
Shuya Li, Fangping Wan, Hantao Shu, Tao Jiang, Dan Zhao, Jianyang Zeng
MONN: A Multi-objective Neural Network for Predicting Pairwise Non-covalent Interactions and Binding Affinities Between Compounds and Proteins. RECOMB (2020)
Weihua Pan, Tao Jiang, Stefano Lonardi
OMGS: Optical Map-Based Genome Scaffolding. J. Comput. Biol. 27 (4) (2020)
Zhiwei Hong, Xiaocheng Fan, Tao Jiang, Jianxing Feng
End-to-End Unpaired Image Denoising with Conditional Adversarial Networks. AAAI (2020)
Lixiang Hong, Jinjian Lin, Shuya Li, Fangping Wan, Hui Yang, Tao Jiang, Dan Zhao, Jianyang Zeng
A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories. Nat. Mach. Intell. 2 (6) (2020)
Chencheng Xu, Qiao Liu, Minlie Huang, Tao Jiang
Reinforced Molecular Optimization with Neighborhood-Controlled Grammars. NeurIPS (2020)
Chencheng Xu, Qiao Liu, Minlie Huang, Tao Jiang
Reinforced Molecular Optimization with Neighborhood-Controlled Grammars. CoRR (2020)
Chencheng Xu, Qiao Liu, Jianyu Zhou, Minzhu Xie, Jianxing Feng, Tao Jiang
Quantifying functional impact of non-coding variants with multi-task Bayesian neural network. Bioinform. 36 (5) (2020)
Hao Chen, Dipan Shaw, Jianyang Zeng, Dongbo Bu, Tao Jiang
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning. Bioinform. 35 (14) (2019)
Ashraful Arefeen, Xinshu Xiao, Tao Jiang
DeepPASTA: deep neural network based polyadenylation site analysis. Bioinform. 35 (22) (2019)
Weihua Pan, Tao Jiang, Stefano Lonardi
OMGS: Optical Map-Based Genome Scaffolding. RECOMB (2019)
Hailin Hu, An Xiao, Sai Zhang, Yangyang Li, Xuanling Shi, Tao Jiang, Linqi Zhang, Lei Zhang, Jianyang Zeng
DeepHINT: understanding HIV-1 integration via deep learning with attention. Bioinform. 35 (10) (2019)
Fangping Wan, Lixiang Hong, An Xiao, Tao Jiang, Jianyang Zeng
NeoDTI: neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions. Bioinform. 35 (1) (2019)
Dipan Shaw, Hao Chen, Tao Jiang
DeepIsoFun: a deep domain adaptation approach to predict isoform functions. Bioinform. 35 (15) (2019)
Peng Zhang, Yao Xu, Tao Jiang, Angsheng Li, Guohui Lin, Eiji Miyano
Improved Approximation Algorithms for the Maximum Happy Vertices and Edges Problems. Algorithmica 80 (5) (2018)
Sai Zhang, Hailin Hu, Tao Jiang, Lei Zhang, Jianyang Zeng
TITER: predicting translation initiation sites by deep learning. Bioinform. 33 (14) (2017)
Sai Zhang, Hailin Hu, Jingtian Zhou, Xuan He, Tao Jiang, Jianyang Zeng
ROSE: A Deep Learning Based Framework for Predicting Ribosome Stalling. RECOMB (2017)
Ei-Wen Yang, Tao Jiang
SDEAP: a splice graph based differential transcript expression analysis tool for population data. Bioinform. 32 (23) (2016)
Minzhu Xie, Qiong Wu, Jianxin Wang, Tao Jiang
H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids. Bioinform. 32 (24) (2016)
Shining Ma, Tao Jiang, Rui Jiang
Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data. Bioinform. 31 (4) (2015)
Peng Zhang, Tao Jiang, Angsheng Li
Improved Approximation Algorithms for the Maximum Happy Vertices and Edges Problems. COCOON (2015)
Yang Yang, Zhimin Zhang, Tao Jiang, Dongya Cheng
Uniformly asymptotic behavior of ruin probabilities in a time-dependent renewal risk model with stochastic return. J. Comput. Appl. Math. 287 (2015)
Masruba Tasnim, Shining Ma, Ei-Wen Yang, Tao Jiang, Wei Li
Accurate inference of isoforms from multiple sample RNA-Seq data. BMC Genom. 16 (S-2) (2015)
Ei-Wen Yang, Tao Jiang
GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data. WABI (2014)
Ergude Bao, Tao Jiang, Thomas Girke
genome assembly guided by closely related references. Bioinform. 30 (12) (2014)
Olga Tanaseichuk, James Borneman, Tao Jiang
Phylogeny-based classification of microbial communities. Bioinform. 30 (4) (2014)
Ergude Bao, Tao Jiang, Thomas Girke
BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences. Bioinform. 29 (10) (2013)
Ei-Wen Yang, Thomas Girke, Tao Jiang
Differential gene expression analysis using coexpression and RNA-Seq data. Bioinform. 29 (17) (2013)
Ei-Wen Yang, Thomas Girke, Tao Jiang
Differential gene expression analysis using coexpression and RNA-Seq data. ICCABS (2013)
Jing Xiao, Tiancheng Lou, Tao Jiang
An Efficient Algorithm for Haplotype Inference on Pedigrees with a Small Number of Recombinants. Algorithmica 62 (3-4) (2012)
Yuri Pirola, Paola Bonizzoni, Tao Jiang
An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (1) (2012)
Wei Li, Tao Jiang
Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. Bioinform. 28 (22) (2012)
Olga Tanaseichuk, James Borneman, Tao Jiang
Separating metagenomic short reads into genomes via clustering. Algorithms Mol. Biol. 7 (2012)
Wei Li, Tao Jiang
Workshop: Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. ICCABS (2012)
En-Yu Lai, Wei-Bung Wang, Tao Jiang, Kun-Pin Wu
A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree. BMC Bioinform. 13 (S-17) (2012)
Minzhu Xie, Jing Li, Tao Jiang
Detecting genome-wide epistases based on the clustering of relatively frequent items. Bioinform. 28 (1) (2012)
Olga Tanaseichuk, James Borneman, Tao Jiang
A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic Reads. WABI (2012)
Minzhu Xie, Jianxin Wang, Tao Jiang
A fast and accurate algorithm for single individual haplotyping. BMC Syst. Biol. 6 (S-2) (2012)
Wei Li, Jianxing Feng, Tao Jiang
Workshop: Transcriptome assembly from RNA-Seq data: Objectives, algorithms and challenges. ICCABS (2011)
Wei-Bung Wang, Tao Jiang
Inferring Haplotypes from genotypes on a Pedigree with mutations, genotyping Errors and Missing Alleles. J. Bioinform. Comput. Biol. 9 (2) (2011)
Paul M. Ruegger, Gianluca Della Vedova, Tao Jiang, James Borneman
Improving Probe Set Selection for Microbial Community Analysis by Leveraging Taxonomic Information of Training Sequences. BMC Bioinform. 12 (2011)
Jianxing Feng, Wei Li, Tao Jiang
Inference of Isoforms from Short Sequence Reads. J. Comput. Biol. 18 (3) (2011)
Ergude Bao, Tao Jiang, Isgouhi Kaloshian, Thomas Girke
SEED: efficient clustering of next-generation sequences. Bioinform. 27 (18) (2011)
Wei Li, Jianxing Feng, Tao Jiang
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly - (Extended Abstract). RECOMB (2011)
Jianxing Feng, Rui Jiang, Tao Jiang
A Max-Flow-Based Approach to the Identification of Protein Complexes Using Protein Interaction and Microarray Data. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (3) (2011)
Yong Chen, Tao Jiang, Rui Jiang
Uncover disease genes by maximizing information flow in the phenome-interactome network. Bioinform. 27 (13) (2011)
Wei Li, Jianxing Feng, Tao Jiang
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly. J. Comput. Biol. 18 (11) (2011)
Olga Tanaseichuk, James Borneman, Tao Jiang
Separating Metagenomic Short Reads into Genomes via Clustering - (Extended Abstract). WABI (2011)
Minzhu Xie, Jing Li, Tao Jiang
Accurate HLA type inference using a weighted similarity graph. BMC Bioinform. 11 (S-11) (2010)
Wei Li, Paul M. Ruegger, James Borneman, Tao Jiang
Polony Identification Using the EM Algorithm Based on a Gaussian Mixture Model. BIBE (2010)
Lan Liu, Tao Jiang
A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on pedigrees without mating loops. J. Comb. Optim. 19 (2) (2010)
Jianxing Feng, Wei Li, Tao Jiang
Inference of Isoforms from Short Sequence Reads. RECOMB (2010)
Lan Liu, Yonghui Wu, Stefano Lonardi, Tao Jiang
Efficient Genome-Wide TagSNP Selection Across Populations via the Linkage Disequilibrium Criterion. J. Comput. Biol. 17 (1) (2010)
Guanqun Shi, Liqing Zhang, Tao Jiang
MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. BMC Bioinform. 11 (2010)
Yuri Pirola, Paola Bonizzoni, Tao Jiang
Haplotype Inference on Pedigrees with Recombinations and Mutations. WABI (2010)
Gianluca Della Vedova, Riccardo Dondi, Tao Jiang, Giulio Pavesi, Yuri Pirola, Lusheng Wang
Beyond evolutionary trees. Nat. Comput. 9 (2) (2010)
Yang Yang, Jiayuan Zhao, Robyn L. Morgan, Wenbo Ma, Tao Jiang
Computational prediction of type III secreted proteins from gram-negative bacteria. BMC Bioinform. 11 (S-1) (2010)
Yiqun Cao, Tao Jiang, Thomas Girke
Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing. Bioinform. 26 (7) (2010)
Jing Xiao, Lan Liu, Lirong Xia, Tao Jiang
Efficient Algorithms for Reconstructing Zero-Recombinant Haplotypes on a Pedigree Based on Fast Elimination of Redundant Linear Equations. SIAM J. Comput. 38 (6) (2009)
Dandan Song, Yang Yang, Bin Yu, Binglian Zheng, Zhidong Deng, Bao-Liang Lu, Xuemei Chen, Tao Jiang
. BMC Bioinform. 10 (S-1) (2009)
Tao Jiang
Some Algorithmic Challenges in Genome-Wide Ortholog Assignment. J. Comput. Sci. Technol. 25 (1) (2009)
Jing Xiao, Tiancheng Lou, Tao Jiang
An Efficient Algorithm for Haplotype Inference on Pedigrees with a Small Number of Recombinants (Extended Abstract). ESA (2009)
Wei-Bung Wang, Tao Jiang
Efficient Inference of Haplotypes from Genotypes on a Pedigree with Mutations and Missing Alleles (Extented Abstract). CPM (2009)
Ying Xu, Ming Li, Tao Jiang
Preface. J. Comput. Sci. Technol. 25 (1) (2009)
Zheng Fu, Tao Jiang
Clustering of Main orthologs for Multiple genomes. J. Bioinform. Comput. Biol. 6 (3) (2008)
Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, Thomas Girke
ChemmineR: a compound mining framework for R. Bioinform. 24 (15) (2008)
Xin Chen, Lingqiong Guo, Zhaocheng Fan, Tao Jiang
W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data. Bioinform. 24 (9) (2008)
Andres Figueroa, Avraham Goldstein, Tao Jiang, Maciej Kurowski, Andrzej Lingas, Mia Persson
Approximate clustering of incomplete fingerprints. J. Discrete Algorithms 6 (1) (2008)
Jing Li, Tao Jiang
A Survey on Haplotyping Algorithms for Tightly Linked Markers. J. Bioinform. Comput. Biol. 6 (1) (2008)
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang
On the Approximation of Correlation Clustering and Consensus Clustering. J. Comput. Syst. Sci. 74 (5) (2008)
Jing Xiao, Lusheng Wang, Xiaowen Liu, Tao Jiang
Finding Additive Biclusters with Random Background. CPM (2008)
Yiqun Cao, Tao Jiang, Thomas Girke
A maximum common substructure-based algorithm for searching and predicting drug-like compounds. ISMB (2008)
Xin Chen, Lan Liu, Zheng Liu, Tao Jiang
On the minimum common integer partition problem. ACM Trans. Algorithms 5 (1) (2008)
Jing Xiao, Lusheng Wang, Xiaowen Liu, Tao Jiang
An Efficient Voting Algorithm for Finding Additive Biclusters with Random Background. J. Comput. Biol. 15 (10) (2008)
Zheng Fu, Tao Jiang
Computing the Breakpoint Distance between Partially Ordered genomes. J. Bioinform. Comput. Biol. 5 (5) (2007)
Brendan Lucier, Tao Jiang, Ming Li
Average-case analysis of QuickSort and Binary Insertion Tree height using incompressibility. Inf. Process. Lett. 103 (2) (2007)
Lan Liu, Xi Chen, Jing Xiao, Tao Jiang
Complexity and approximation of the minimum recombinant haplotype configuration problem. Theor. Comput. Sci. 378 (3) (2007)
Zheng Fu, Tao Jiang
Computing the Breakpoint Distance between Partially Ordered Genomes. APBC (2007)
Zheng Liu, S. Frank Yan, John R. Walker, Theresa A. Zwingman, Tao Jiang, Jing Li, Yingyao Zhou
Study of gene function based on spatial co-expression in a high-resolution mouse brain atlas. BMC Syst. Biol. 1 (2007)
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang
MSOAR: A High-Throughput Ortholog Assignment System Based on Genome Rearrangement. J. Comput. Biol. 14 (9) (2007)
Jing Xiao, Lan Liu, Lirong Xia, Tao Jiang
Fast elimination of redundant linear equations and reconstruction of recombination-free mendelian inheritance on a pedigree. SODA (2007)
Wenbo Zhao, Peng Zhang, Tao Jiang
A network flow approach to the Minimum Common Integer Partition Problem. Theor. Comput. Sci. 369 (1-3) (2006)
Zhengchang Su, Fenglou Mao, Hongwei Wu, PhuongAn Dam, Xin Chen, Tao Jiang, Victor Olman, Brian Palenik, Ying Xu
Understanding microbial genomic structures and applications to biological pathway inference. GrC (2006)
Haifeng Li, Xin Chen, Keshu Zhang, Tao Jiang
A General Framework for Biclustering Gene Expression Data. J. Bioinform. Comput. Biol. 4 (4) (2006)
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang
A Parsimony Approach to Genome-Wide Ortholog Assignment. RECOMB (2006)
Haifeng Li, Tao Jiang, Keshu Zhang
Efficient and robust feature extraction by maximum margin criterion. IEEE Trans. Neural Networks 17 (1) (2006)
Xin Chen, Lan Liu, Zheng Liu, Tao Jiang
On the Minimum Common Integer Partition Problem. CIAC (2006)
Jie Zheng, Jan T. Svensson, Kavitha Madishetty, Timothy J. Close, Tao Jiang, Stefano Lonardi
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets. BMC Bioinform. 7 (2006)
Haifeng Li, Tao Jiang
A Class of Edit Kernels for SVMs to Predict Translation Initiation Sites in Eukaryotic mRNAs. J. Comput. Biol. 12 (6) (2005)
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang
Correlation Clustering and Consensus Clustering. ISAAC (2005)
Zheng Liu, Xin Chen, James Borneman, Tao Jiang
A Fast Algorithm for Approximate String Matching on Gene Sequences. CPM (2005)
Andres Figueroa, Avraham Goldstein, Tao Jiang, Maciej Kurowski, Andrzej Lingas, Mia Persson
Approximate Clustering of Fingerprint Vectors with Missing Values. CATS (2005)
Xin Chen, Jie Zheng, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang
Computing the Assignment of Orthologous Genes via Genome Rearrangement. APBC (2005)
Haifeng Li, Keshu Zhang, Tao Jiang
Robust and Accurate Cancer Classification with Gene Expression Profiling. CSB (2005)
Haifeng Li, Keshu Zhang, Tao Jiang
The Regularized EM Algorithm. AAAI (2005)
Jing Li, Tao Jiang
Computing the Minimum Recombinant Haplotype Configuration from Incomplete Genotype Data on a Pedigree by Integer Linear Programming. J. Comput. Biol. 12 (6) (2005)

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Publication Activity (10 Years)

Top Topics

Top Venues

Tao Jiang