Thomas Girke

Publication Activity (10 Years)

Years Active: 2008-2016
Publications (10 Years): 2

Top Topics

Closely Related

Assembly Process

Genomic Sequences

Escherichia Coli

Top Venues

J. Chem. Inf. Model.

Publications

Tyler W. H. Backman, Thomas Girke
bioassayR: Cross-Target Analysis of Small Molecule Bioactivity. J. Chem. Inf. Model. 56 (7) (2016)
Tyler W. H. Backman, Thomas Girke
systemPipeR: NGS workflow and report generation environment. BMC Bioinform. 17 (2016)
Ergude Bao, Tao Jiang, Thomas Girke
genome assembly guided by closely related references. Bioinform. 30 (12) (2014)
Ergude Bao, Tao Jiang, Thomas Girke
BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences. Bioinform. 29 (10) (2013)
Ei-Wen Yang, Thomas Girke, Tao Jiang
Differential gene expression analysis using coexpression and RNA-Seq data. Bioinform. 29 (17) (2013)
Ei-Wen Yang, Thomas Girke, Tao Jiang
Differential gene expression analysis using coexpression and RNA-Seq data. ICCABS (2013)
Yan Wang, Tyler W. H. Backman, Kevin Horan, Thomas Girke
fmcsR: mismatch tolerant maximum common substructure searching in R. Bioinform. 29 (21) (2013)
Ergude Bao, Tao Jiang, Isgouhi Kaloshian, Thomas Girke
SEED: efficient clustering of next-generation sequences. Bioinform. 27 (18) (2011)
Tyler W. H. Backman, Yiqun Cao, Thomas Girke
ChemMine tools: an online service for analyzing and clustering small molecules. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Xinping Cui, Na You, Thomas Girke, Richard Michelmore, Allen Van Deynze
Single feature polymorphism detection using recombinant inbred line microarray expression data. Bioinform. 26 (16) (2010)
Kevin Horan, Christian R. Shelton, Thomas Girke
Predicting conserved protein motifs with Sub-HMMs. BMC Bioinform. 11 (2010)
Yiqun Cao, Tao Jiang, Thomas Girke
Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing. Bioinform. 26 (7) (2010)
Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, Thomas Girke
ChemmineR: a compound mining framework for R. Bioinform. 24 (15) (2008)
Yiqun Cao, Tao Jiang, Thomas Girke
A maximum common substructure-based algorithm for searching and predicting drug-like compounds. ISMB (2008)