Predicting conserved protein motifs with Sub-HMMs.
Kevin HoranChristian R. SheltonThomas GirkePublished in: BMC Bioinform. (2010)
Keyphrases
- protein families
- structural motifs
- transcription factor binding sites
- nucleotide sequences
- predicting protein
- protein sequences
- hidden markov models
- dna sequences
- binding sites
- sequence alignment
- secondary structure
- protein folding
- rna sequences
- molecular biology
- dna binding
- amino acids
- motif finding
- protein structure
- sequence data
- sequence similarity
- biological sequences
- computational methods
- motif discovery
- human genome
- location prediction
- rna molecules
- protein coding regions
- protein function
- protein complexes
- protein interaction
- regulatory elements
- multiple sequence alignment
- protein structure prediction
- subcellular localization
- transcription factors
- pairwise
- dynamic programming
- speech recognition
- cis regulatory
- computational biology
- structural features
- genome sequences
- rna secondary structures
- amino acid sequences