Zhengchang Su

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 4

Top Topics

Transcription Factor Binding Sites

Top Venues

Database J. Biol. Databases Curation

BMC Syst. Biol.

Publications

Pengyu Ni, Zhengchang Su
PCRMS: a database of predicted cis-regulatory modules and constituent transcription factor binding sites in genomes. Database J. Biol. Databases Curation 2022 (2022) (2022)
Qinglin Mei, Guojun Li, Zhengchang Su
Clustering single-cell RNA-seq data by rank constrained similarity learning. Bioinform. 37 (19) (2021)
Xiangyu Liu, Di Li, Juntao Liu, Zhengchang Su, Guojun Li
RecBic: a fast and accurate algorithm recognizing trend-preserving biclusters. Bioinform. 36 (20) (2020)
Yang Li, Pengyu Ni, Shaoqiang Zhang, Guojun Li, Zhengchang Su
ProSampler: an ultrafast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery. Bioinform. 35 (22) (2019)
Chen Xu, Zhengchang Su
Identification of cell types from single-cell transcriptomes using a novel clustering method. Bioinform. 31 (12) (2015)
Shaoqiang Zhang, Xiguo Zhou, Chuanbin Du, Zhengchang Su
SPIC: A novel similarity metric for comparing transcription factor binding site motifs based on information contents. BMC Syst. Biol. 7 (S-2) (2013)
Shaoqiang Zhang, Lifen Jiang, Chuanbin Du, Zhengchang Su
A novel information contents based similarity metric for comparing TFBS motifs. ISB (2012)
Shaoqiang Zhang, Shan Li, Meng Niu, Phuc T. Pham, Zhengchang Su
MotifClick: prediction of cis-regulatory binding sites via merging cliques. BMC Bioinform. 12 (2011)
Shaoqiang Zhang, Huazhi Sun, Guojun Li, Zhengchang Su
A Simulated Annealing Algorithm for Resource Allocation and Scheduling with Precedence Constraints in the GLECLUBS/eGLECLUBS Pipelines. CSE (2011)
Shaoqiang Zhang, Shan Li, Phuc T. Pham, Zhengchang Su
Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes. BMC Bioinform. 11 (2010)
Zhengchang Su, Fenglou Mao, Hongwei Wu, PhuongAn Dam, Xin Chen, Tao Jiang, Victor Olman, Brian Palenik, Ying Xu
Understanding microbial genomic structures and applications to biological pathway inference. GrC (2006)
Fenglou Mao, Zhengchang Su, Victor Olman, PhuongAn Dam, Zhijie Liu, Ying Xu
Mapping of orthologous genes in the context of biological pathways: An application of integer programming. Proc. Natl. Acad. Sci. USA 103 (1) (2006)
Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu
Pathway Mapping with Operon Information: An Integer-Programming Method. CSB (2004)
Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu
CUBIC: Search for Binding Sites. CSB (2004)
Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu
Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. CSB (2004)
Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu
Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. CSB (2004)
Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu
Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. BIBE (2004)
PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu
In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. CSB (2004)
Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu
Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB (2004)
Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu
A Knowledge Base for Computational Pathway Reconstruction. CSB (2004)
Zhengchang Su, PhuongAn Dam, Xin Chen, Victor Olman, Tao Jiang, Brian Palenik, Ying Xu
Computational Inference of Regulatory Pathways in Microbes. CSB (2003)