Liqing Zhang

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 15

Top Topics

Genetic Variation

Redescription Mining

Top Venues

J. Comput. Biol.

Publications

Haohui Wang, Baoyu Jing, Kaize Ding, Yada Zhu, Wei Cheng, Si Zhang, Yonghui Fan, Liqing Zhang, Dawei Zhou
Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalization. KDD (2024)
Saima Sultana Tithi, Frank O. Aylward, Roderick V. Jensen, Liqing Zhang
FastViromeExplorer-Novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data. J. Comput. Biol. 30 (4) (2023)
Shafayat Ahmed, Muhit Islam Emon, Nazifa Ahmed Moumi, Liqing Zhang
LM-ARG: Identification & classification of antibiotic resistance genes leveraging pre-trained protein language models. BIBM (2022)
Nazifa Ahmed Moumi, Connor L. Brown, Peter J. Vikesland, Amy Pruden, Liqing Zhang
Protein-Protein Interaction Network Analysis Reveals Distinct Patterns of Antibiotic Resistance Genes. BIBM (2022)
Gustavo A. Arango-Argoty, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang
MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples. J. Comput. Biol. 28 (11) (2021)
Shunyu David Yao, Muhammad Ali Gulzar, Liqing Zhang, Ali Raza Butt
Towards a Serverless Bioinformatics Cyberinfrastructure Pipeline. HiPS@HPDC (2021)
Xiao Liang, Kyle Akers, Ishi Keenum, Lauren Wind, Suraj Gupta, Chaoqi Chen, Reem Aldaihani, Amy Pruden, Liqing Zhang, Katharine F. Knowlton, Kang Xia, Lenwood S. Heath
AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata. BMC Bioinform. 22 (1) (2021)
Gustavo A. Arango-Argoty, G. K. P. Guron, Emily Garner, M. V. Riquelme, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang
ARGminer: a web platform for the crowdsourcing-based curation of antibiotic resistance genes. Bioinform. 36 (9) (2020)
Gustavo A. Arango-Argoty, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang
A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples. ICCABS (2020)
Shanwen Zhang, Liqing Zhang
Combining weighted adaptive CS-LBP and local linear discriminant projection for gait recognition. Multim. Tools Appl. 77 (10) (2018)
Jinlong Huo, Wenmin Chen, Xiaowei Wu, Kuan Yang, Weirong Pan, Liqing Zhang, Yangzhi Zeng
Analysis of whole genome sequence and genome-wide SNPs in highly inbred pigs. ICCABS (2017)
Shanwen Zhang, Xiaowei Wu, Zhuhong You, Liqing Zhang
Leaf image based cucumber disease recognition using sparse representation classification. Comput. Electron. Agric. 134 (2017)
Jacob Porter, Liqing Zhang
InfoTrim: A DNA read quality trimmer using entropy. ICCABS (2017)
Mohammad Shabbir Hasan, Xiaowei Wu, Layne T. Watson, Zhiyi Li, Liqing Zhang
UPS-indel: A better approach for finding indel redundancy. ICCABS (2016)
Mohammad Shabbir Hasan, Saima Sultana Tithi, Eli Tilevich, Liqing Zhang
Poster: Diagnosing and treating code-duplication problems in bioinformatics libraries. ICCABS (2016)
Mingming Liu, Layne T. Watson, Liqing Zhang
HMMvar-func: a new method for predicting the functional outcome of genetic variants. BMC Bioinform. 16 (2015)
Wei Chen, Xitong Zhang, Jordan Brooker, Hao Lin, Liqing Zhang, Kuo-Chen Chou
PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions. Bioinform. 31 (1) (2015)
Mingming Liu, Layne T. Watson, Liqing Zhang
Classification of Mutations by Functional Impact Type: Gain of Function, Loss of Function, and Switch of Function. ISBRA (2014)
Zhiyi Li, Xiaowei Wu, Bin He, Liqing Zhang
Vindel: a simple pipeline for checking indel redundancy. BMC Bioinform. 15 (2014)
Jacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang
Improving bisulfite short-read mapping efficiency with hairpin-bisulfite data. ICCABS (2014)
Mingming Liu, Layne T. Watson, Liqing Zhang
Quantitative prediction of the effect of genetic variation using hidden Markov models. BMC Bioinform. 15 (2014)
Hong Tran, Jacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang
Objective and Comprehensive Evaluation of Bisulfite Short Read Mapping Tools. Adv. Bioinformatics 2014 (2014)
Mingming Liu, Yanwei Huang, Liqing Zhang, David R. Bevan
A new functional association-based protein complex prediction. BIBM Workshops (2011)
Liqing Zhang, Layne T. Watson, Lenwood S. Heath
A Network of SCOP Hidden Markov Models and Its Analysis. BMC Bioinform. 12 (2011)
Ashwin M. Aji, Liqing Zhang, Wu-chun Feng
GPU-RMAP: Accelerating Short-Read Mapping on Graphics Processors. CSE (2010)
Liqing Zhang, Layne T. Watson
The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model. ISBRA (2010)
Guanqun Shi, Liqing Zhang, Tao Jiang
MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. BMC Bioinform. 11 (2010)
Wenhui Huang, Pengyuan Wang, Zhen Liu, Liqing Zhang
Identifying disease associations via genome-wide association studies. BMC Bioinform. 10 (S-1) (2009)
Deng Pan, Liqing Zhang
A Holistic View of Evolutionary Rates in Paralogous and Orthologous Genes. ICIC (2) (2008)
Mark J. Lawson, Lenwood S. Heath, Naren Ramakrishnan, Liqing Zhang
Using Cost-Sensitive Learning to Determine Gene Conversions. ICIC (2) (2008)
Wenhui Huang, Liqing Zhang
A Framework to Understand the Mechanism of Toxicity. ICIC (2) (2008)
Liqing Zhang, Layne T. Watson
Note on the Computation of Critical Effective Population Sizes. J. Comput. Biol. 14 (7) (2007)
Mark J. Lawson, Liqing Zhang
The Identification of Antisense Gene Pairs Through Available Software. ISBRA (2007)