Hao Lin

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 39

Top Topics

Saccharomyces Cerevisiae

Transcription Factors

Subcellular Location

Top Venues

Briefings Bioinform.

Comput. Biol. Medicine

Nucleic Acids Res.

Publications

Xue-Qin Xie, Changchun Wu, Cai-Yi Ma, Dong Gao, Wei Sun, Jian Huang, Kejun Deng, Dan Yan, Hao Lin
Detecting key genes relative expression orderings as biomarkers for machine learning-based intelligent screening and analysis of type 2 diabetes mellitus. Expert Syst. Appl. 255 (2024)
Bakanina Kissanga Grace-Mercure, Hasan Zulfiqar, Shenghan Gao, Sophyani Banaamwini Yussif, Biffon Manyura Momanyi, Lin Ning, Hao Lin, Cheng-Bing Huang
E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization. Inf. 15 (3) (2024)
Cai-Yi Ma, Yamei Luo, Tian-Yu Zhang, Yu-Duo Hao, Xue-Qin Xie, Xiao-Wei Liu, Xiaolei Ren, Xiaolin He, Yu-Mei Han, Ke-Jun Deng, Dan Yan, Hui Yang, Hua Tang, Hao Lin
Predicting coronary heart disease in Chinese diabetics using machine learning. Comput. Biol. Medicine 169 (2024)
Li Liu, Kaiyuan Han, Huimin Sun, Lu Han, Dong Gao, Qilemuge Xi, Lirong Zhang, Hao Lin
A comprehensive review of bioinformatics tools for chromatin loop calling. Briefings Bioinform. 24 (2) (2023)
Xiao-Wei Liu, Tian-Yu Shi, Dong Gao, Cai-Yi Ma, Hao Lin, Dan Yan, Ke-Jun Deng
iPADD: A Computational Tool for Predicting Potential Antidiabetic Drugs Using Machine Learning Algorithms. J. Chem. Inf. Model. 63 (15) (2023)
Jie Gao, Yongxian Feng, Yan Yang, Yuetong Shi, Junjie Liu, Hao Lin, Lirong Zhang
Identification of Key DNA methylation sites related to differentially expressed genes in Lung squamous cell carcinoma. Comput. Biol. Medicine 167 (2023)
Lirong Zhang, Yanchao Yang, Lu Chai, Qianzhong Li, Junjie Liu, Hao Lin, Li Liu
A deep learning model to identify gene expression level using cobinding transcription factor signals. Briefings Bioinform. 23 (1) (2022)
Zhao-Yue Zhang, Lin Ning, Xiucai Ye, Yu-He Yang, Yasunori Futamura, Tetsuya Sakurai, Hao Lin
iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism. Briefings Bioinform. 23 (5) (2022)
Hongfei Li, Yue Gong, Yifeng Liu, Hao Lin, Guohua Wang
Detection of transcription factors binding to methylated DNA by deep recurrent neural network. Briefings Bioinform. 23 (1) (2022)
Zhao-Yue Zhang, Zi-Jie Sun, Yu-He Yang, Hao Lin
Towards a better prediction of subcellular location of long non-coding RNA. Frontiers Comput. Sci. 16 (5) (2022)
Zijie Sun, Qinlai Huang, Yuhe Yang, Shihao Li, Hao Lv, Yang Zhang, Hao Lin, Lin Ning
PSnoD: identifying potential snoRNA-disease associations based on bounded nuclear norm regularization. Briefings Bioinform. 23 (4) (2022)
Hao Lv, Yang Zhang, Jia-Shu Wang, Shi-Shi Yuan, Zi-Jie Sun, Fu-Ying Dao, Zheng-Xing Guan, Hao Lin, Ke-Jun Deng
iRice-MS: An integrated XGBoost model for detecting multitype post-translational modification sites in rice. Briefings Bioinform. 23 (1) (2022)
Jianqiang Xiao, Mujiexin Liu, Qinlai Huang, Zijie Sun, Lin Ning, Junguo Duan, Siquan Zhu, Jian Huang, Hao Lin, Hui Yang
Analysis and modeling of myopia-related factors based on questionnaire survey. Comput. Biol. Medicine 150 (2022)
Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu, Hao Lin, Dong Wang
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Res. 50 (D1) (2022)
Zhao-Yue Zhang, Yu-He Yang, Hui Ding, Dong Wang, Wei Chen, Hao Lin
Design powerful predictor for mRNA subcellular location prediction in Homo sapiens. Briefings Bioinform. 22 (1) (2021)
Fu-Ying Dao, Hao Lv, Hasan Zulfiqar, Hui Yang, Wei Su, Hui Gao, Hui Ding, Hao Lin
A computational platform to identify origins of replication sites in eukaryotes. Briefings Bioinform. 22 (2) (2021)
Fu-Ying Dao, Hao Lv, Wei Su, Zi-Jie Sun, Qin-Lai Huang, Hao Lin
iDHS-Deep: an integrated tool for predicting DNase I hypersensitive sites by deep neural network. Briefings Bioinform. 22 (5) (2021)
Hasan Zulfiqar, Muhammad Shareef Masoud, Hui Yang, Shuguang Han, Cheng-Yan Wu, Hao Lin
Screening of Prospective Plant Compounds as H1R and CL1R Inhibitors and Its Antiallergic Efficacy through Molecular Docking Approach. Comput. Math. Methods Medicine 2021 (2021)
Hao Lv, Fu-Ying Dao, Zheng-Xing Guan, Hui Yang, Yan-Wen Li, Hao Lin
Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method. Briefings Bioinform. 22 (4) (2021)
Dan Zhang, Zhao-Chun Xu, Wei Su, Yu-He Yang, Hao Lv, Hui Yang, Hao Lin
iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features. Bioinform. 37 (2) (2021)
Fu-Ying Dao, Hao Lv, Dan Zhang, Zi-Mei Zhang, Li Liu, Hao Lin
DeepYY1: a deep learning approach to identify YY1-mediated chromatin loops. Briefings Bioinform. 22 (4) (2021)
Hui Yang, Yamei Luo, Xiaolei Ren, Ming Wu, Xiaolin He, Bowen Peng, Kejun Deng, Dan Yan, Hua Tang, Hao Lin
Risk Prediction of Diabetes: Big data mining with fusion of multifarious physical examination indicators. Inf. Fusion 75 (2021)
Jun Wang, Pu-Feng Du, Xin-Yu Xue, Guang-Ping Li, Yuan-Ke Zhou, Wei Zhao, Hao Lin, Wei Chen
VisFeature: a stand-alone program for visualizing and analyzing statistical features of biological sequences. Bioinform. 36 (4) (2020)
Qiang Tang, Juanjuan Kang, Jiaqing Yuan, Hua Tang, Xianhai Li, Hao Lin, Jian Huang, Wei Chen
DNA4mC-LIP: a linear integration method to identify N4-methylcytosine site in multiple species. Bioinform. 36 (11) (2020)
Hui Yang, Wuritu Yang, Fu-Ying Dao, Hao Lv, Hui Ding, Wei Chen, Hao Lin
A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae. Briefings Bioinform. 21 (5) (2020)
Hao Lv, Zi-Mei Zhang, Shi-Hao Li, Jiu-Xin Tan, Wei Chen, Hao Lin
Evaluation of different computational methods on 5-methylcytosine sites identification. Briefings Bioinform. 21 (3) (2020)
Zhao-Chun Xu, Peng-Mian Feng, Hui Yang, Wangren Qiu, Wei Chen, Hao Lin
iRNAD: a computational tool for identifying D modification sites in RNA sequence. Bioinform. 35 (23) (2019)
Fu-Ying Dao, Hao Lv, Fang Wang, Chao-Qin Feng, Hui Ding, Wei Chen, Hao Lin
Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique. Bioinform. 35 (12) (2019)
Hao Lin, Zhi-Yong Liang, Hua Tang, Wei Chen
Identifying Sigma70 Promoters with Novel Pseudo Nucleotide Composition. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Yang Zhang, Tianyuan Liu, Liqun Chen, Jinxurong Yang, Jiayi Yin, Yuncong Zhang, Zhixi Yun, Hao Xu, Lin Ning, Feng-Biao Guo, Yongshuai Jiang, Hao Lin, Dong Wang, Yan Huang, Jian Huang
RIscoper: a tool for RNA-RNA interaction extraction from the literature. Bioinform. 35 (17) (2019)
Chao-Qin Feng, Zhao-Yue Zhang, Xiao-Juan Zhu, Yan Lin, Wei Chen, Hua Tang, Hao Lin
iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional terminators. Bioinform. 35 (9) (2019)
Wei Chen, Hao Lv, Fulei Nie, Hao Lin
i6mA-Pred: identifying DNA N6-methyladenine sites in the rice genome. Bioinform. 35 (16) (2019)
Hui Yang, Hao Lv, Hui Ding, Wei Chen, Hao Lin
. J. Comput. Biol. 25 (11) (2018)
Zhen-Dong Su, Yan Huang, Zhao-Yue Zhang, Ya-Wei Zhao, Dong Wang, Wei Chen, Kuo-Chen Chou, Hao Lin
iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC. Bioinform. 34 (24) (2018)
Wei Chen, Hui Yang, Peng-Mian Feng, Hui Ding, Hao Lin
iDNA4mC: identifying DNA N4-methylcytosine sites based on nucleotide chemical properties. Bioinform. 33 (22) (2017)
Wangren Qiu, Bi-Qian Sun, Hua Tang, Jian Huang, Hao Lin
Identify and analysis crotonylation sites in histone by using support vector machines. Artif. Intell. Medicine 83 (2017)
Zhi-Yong Liang, Hong-Yan Lai, Huan Yang, Chang-Jian Zhang, Hui Yang, Huan-Huan Wei, Xin-Xin Chen, Ya-Wei Zhao, Zhen-Dong Su, Wen-Chao Li, En-Ze Deng, Hua Tang, Wei Chen, Hao Lin
Pro54DB: a database for experimentally verified sigma-54 promoters. Bioinform. 33 (3) (2017)
Bifang He, Guoshi Chai, Yaocong Duan, Zhiqiang Yan, Liuyang Qiu, Huixiong Zhang, Zechun Liu, Qiang He, Ke Han, Beibei Ru, Feng-Biao Guo, Hui Ding, Hao Lin, Xianlong Wang, Nini Rao, Peng Zhou, Jian Huang
BDB: biopanning data bank. Nucleic Acids Res. 44 (Database-Issue) (2016)
Hui Ding, Zhi-Yong Liang, Feng-Biao Guo, Jian Huang, Wei Chen, Hao Lin
Predicting bacteriophage proteins located in host cell with feature selection technique. Comput. Biol. Medicine 71 (2016)
Wei Chen, Xitong Zhang, Jordan Brooker, Hao Lin, Liqing Zhang, Kuo-Chen Chou
PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions. Bioinform. 31 (1) (2015)
Shou-Hui Guo, En-Ze Deng, Liqin Xu, Hui Ding, Hao Lin, Wei Chen, Kuo-Chen Chou
iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition. Bioinform. 30 (11) (2014)
Ziqiang Li, Mingtian Zhou, Lijia Xu, Hao Lin, Haibo Pu
Training sparse SVM on the core sets of fitting-planes. Neurocomputing 130 (2014)
Ziqiang Li, Mingtian Zhou, Hao Lin, Haibo Pu
A two stages sparse SVM training. Int. J. Mach. Learn. Cybern. 5 (3) (2014)
Beibei Ru, Peter A. C. 't Hoen, Fulei Nie, Hao Lin, Feng-Biao Guo, Jian Huang
Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library. J. Bioinform. Comput. Biol. 12 (1) (2014)
Peng-Mian Feng, Hao Lin, Wei Chen
Identification of Antioxidants from Sequence Information Using Naïve Bayes. Comput. Math. Methods Medicine 2013 (2013)
Peng-Mian Feng, Hui Ding, Wei Chen, Hao Lin
Naïve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins. Comput. Math. Methods Medicine 2013 (2013)
Hui Ding, Hao Lin, Juan Feng
The rate of opening and closing of the DNA gate for topoisomerase II. Theory Biosci. 132 (1) (2013)
Jian Huang, Beibei Ru, Ping Zhu, Fulei Nie, Jun Yang, Xuyang Wang, Ping Dai, Hao Lin, Feng-Biao Guo, Nini Rao
MimoDB 2.0: a mimotope database and beyond. Nucleic Acids Res. 40 (Database-Issue) (2012)
Wei Chen, Hao Lin
Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine. Comput. Biol. Medicine 42 (4) (2012)
Hao Lin, Qian-Zhong Li
Eukaryotic and prokaryotic promoter prediction using hybrid approach. Theory Biosci. 130 (2) (2011)
Wei Chen, Liaofu Luo, Lirong Zhang, Hao Lin
Recognition of DNase I hypersensitive sites in multiple cell lines. Int. J. Bioinform. Res. Appl. 5 (4) (2009)
Hao Lin, Qian-Zhong Li
Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components. J. Comput. Chem. 28 (9) (2007)