Tianyu Cui

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 39

Top Topics

Pairwise Interactions

Language Modeling

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Alexander Capstick, Francesca Palermo, Kimberley Zakka, Nan Fletcher-Lloyd, Chloe Walsh, Tianyu Cui, Samaneh Kouchaki, Raphaella Jackson, Martin Tran, Michael Crone, Kirsten Jensen, Paul S. Freemont, Ravi Vaidyanathan, Magdalena Kolanko, Jessica True, Sarah Daniels, David Wingfield, Ramin Nilforooshan, Payam M. Barnaghi
Digital remote monitoring for screening and early detection of urinary tract infections. npj Digit. Medicine 7 (1) (2024)
Alexander Capstick, Tianyu Cui, Yu Chen, Payam M. Barnaghi
Representation Learning of Daily Movement Data Using Text Encoders. CoRR (2024)
Tianyu Cui, Yanling Wang, Chuanpu Fu, Yong Xiao, Sijia Li, Xinhao Deng, Yunpeng Liu, Qinglin Zhang, Ziyi Qiu, Peiyang Li, Zhixing Tan, Junwu Xiong, Xinyu Kong, Zujie Wen, Ke Xu, Qi Li
Risk Taxonomy, Mitigation, and Assessment Benchmarks of Large Language Model Systems. CoRR (2024)
Tianyu Cui, Shiyu Ma, Ziang Chen, Tong Xiao, Shimin Tao, Yilun Liu, Shenglin Zhang, Duoming Lin, Changchang Liu, Yuzhe Cai, Weibin Meng, Yongqian Sun, Dan Pei
LogEval: A Comprehensive Benchmark Suite for Large Language Models In Log Analysis. CoRR (2024)
Tianyu Cui, Hongxia Li, Jingya Wang, Ye Shi
Harmonizing Generalization and Personalization in Federated Prompt Learning. CoRR (2024)
Yu Chen, Tianyu Cui, Alexander Capstick, Nan Fletcher-Lloyd, Payam M. Barnaghi
Enabling Regional Explainability by Automatic and Model-agnostic Rule Extraction. CoRR (2024)
Guiying Wu, Mengmeng Song, Ke Wang, Tianyu Cui, Zicong Jiao, Liyan Ji, Xuan Gao, Jiayin Wang, Tao Liu, Xuefeng Xia, Huan Fang, Yanfang Guan, Xin Yi
DELFMUT: duplex sequencing-oriented depth estimation model for stable detection of low-frequency mutations. Briefings Bioinform. 24 (5) (2023)
Shutong Ding, Tianyu Cui, Jingya Wang, Ye Shi
Two Sides of The Same Coin: Bridging Deep Equilibrium Models and Neural ODEs via Homotopy Continuation. NeurIPS (2023)
Shutong Ding, Tianyu Cui, Jingya Wang, Ye Shi
Two Sides of The Same Coin: Bridging Deep Equilibrium Models and Neural ODEs via Homotopy Continuation. CoRR (2023)
Vishnu Raj, Tianyu Cui, Markus Heinonen, Pekka Marttinen
Incorporating functional summary information in Bayesian neural networks using a Dirichlet process likelihood approach. AISTATS (2023)
Tianyuan Liu, Bohao Zou, Manman He, Yongfei Hu, Yiying Dou, Tianyu Cui, Puwen Tan, Shaobin Li, Shuan Rao, Yan Huang, Sixi Liu, Kaican Cai, Dong Wang
LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism. Briefings Bioinform. 24 (1) (2023)
Tianyu Cui, Gaopeng Gou, Gang Xiong
6GCVAE: Gated Convolutional Variational Autoencoder for IPv6 Target Generation. CoRR (2022)
Juanjuan Kang, Qiang Tang, Jun He, Le Li, Nianling Yang, Shuiyan Yu, Mengyao Wang, Yuchen Zhang, Jiahao Lin, Tianyu Cui, Yongfei Hu, Puwen Tan, Jun Cheng, Hailong Zheng, Dong Wang, Xi Su, Wei Chen, Yan Huang
RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. Nucleic Acids Res. 50 (D1) (2022)
Tianyu Cui, Yogesh Kumar, Pekka Marttinen, Samuel Kaski
Deconfounded Representation Similarity for Comparison of Neural Networks. NeurIPS (2022)
Haibo Zhu, Hao Fu, Tianyu Cui, Lin Ning, Huaguo Shao, Yehan Guo, Yanting Ke, Jiayi Zheng, Hongyan Lin, Xin Wu, Guanghao Liu, Jun He, Xin Han, Wenlin Li, Xiaoyang Zhao, Huasong Lu, Dong Wang, Kongfa Hu, Xiaopei Shen
RNAPhaSep: a resource of RNAs undergoing phase separation. Nucleic Acids Res. 50 (D1) (2022)
Tianyu Cui, Gang Xiong, Chang Liu, Junzheng Shi, Peipei Fu, Gaopeng Gou
GALG: Linking Addresses in Tracking Ecosystem Using Graph Autoencoder with Link Generation. ECML/PKDD (6) (2022)
Jun Cheng, Yunqing Lin, Linfu Xu, Kechen Chen, Qi Li, Kaixin Xu, Lin Ning, Juanjuan Kang, Tianyu Cui, Yan Huang, Xiaoyang Zhao, Dong Wang, Yanhui Li, Xi Su, Bin Yang
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation. Nucleic Acids Res. 50 (D1) (2022)
Tianyu Cui, Chang Liu, Gaopeng Gou, Junzheng Shi, Gang Xiong
A Comprehensive Study of Accelerating IPv6 Deployment. CoRR (2022)
Tianyu Cui, Yogesh Kumar, Pekka Marttinen, Samuel Kaski
Deconfounded Representation Similarity for Comparison of Neural Networks. CoRR (2022)
Tianyu Cui, Gaopeng Gou, Gang Xiong, Zhen Li, Mingxin Cui, Chang Liu
SiamHAN: IPv6 Address Correlation Attacks on TLS Encrypted Traffic via Siamese Heterogeneous Graph Attention Network. CoRR (2022)
Vishnu Raj, Tianyu Cui, Markus Heinonen, Pekka Marttinen
Look beyond labels: Incorporating functional summary information in Bayesian neural networks. CoRR (2022)
Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu, Hao Lin, Dong Wang
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Res. 50 (D1) (2022)
Tianyu Cui, Gaopeng Gou, Gang Xiong, Chang Liu, Peipei Fu, Zhen Li
6GAN: IPv6 Multi-Pattern Target Generation via Generative Adversarial Nets with Reinforcement Learning. CoRR (2022)
Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun Cheng, Yiying Dou, Dong Wang
MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. Nucleic Acids Res. 49 (Database-Issue) (2021)
Tianyu Cui, Gaopeng Gou, Gang Xiong, Zhen Li, Mingxin Cui, Chang Liu
SiamHAN: IPv6 Address Correlation Attacks on TLS Encrypted Traffic via Siamese Heterogeneous Graph Attention Network. USENIX Security Symposium (2021)
Yan Huang, Jing Wang, Yue Zhao, Huafeng Wang, Tianyuan Liu, Yuhe Li, Tianyu Cui, Weiyi Li, Yige Feng, Jiaxin Luo, Jiaqi Gong, Lin Ning, Yong Zhang, Dong Wang, Yang Zhang
cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function. Nucleic Acids Res. 49 (Database-Issue) (2021)
Ruiqi Li, Lingyun Lu, Tianyu Cui, Weiwei Gu, Shaodong Ma, Gang Xu, Harry Eugene Stanley
Assessing the Attraction of Cities on Venture Capital From a Scaling Law Perspective. IEEE Access 9 (2021)
Tianyu Cui, Gaopeng Gou, Gang Xiong, Chang Liu, Peipei Fu, Zhen Li
6GAN: IPv6 Multi-Pattern Target Generation via Generative Adversarial Nets with Reinforcement Learning. INFOCOM (2021)
Yunqing Lin, Tianyuan Liu, Tianyu Cui, Zhao Wang, Yuncong Zhang, Puwen Tan, Yan Huang, Jia Yu, Dong Wang
RNAInter in 2020: RNA interactome repository with increased coverage and annotation. Nucleic Acids Res. 48 (Database-Issue) (2020)
Tianyu Cui, Gang Xiong, Gaopeng Gou, Junzheng Shi, Wei Xia
6VecLM: Language Modeling in Vector Space for IPv6 Target Generation. CoRR (2020)
Tianyu Cui, Aki S. Havulinna, Pekka Marttinen, Samuel Kaski
Informative Gaussian Scale Mixture Priors for Bayesian Neural Networks. CoRR (2020)
Tianyu Cui, Gang Xiong, Gaopeng Gou, Junzheng Shi, Wei Xia
6VecLM: Language Modeling in Vector Space for IPv6 Target Generation. ECML/PKDD (4) (2020)
Tianyu Cui, Gaopeng Gou, Gang Xiong
6GCVAE: Gated Convolutional Variational Autoencoder for IPv6 Target Generation. PAKDD (1) (2020)
Lei Xu, Gang Xiong, Gaopeng Gou, Jie Chen, Tianyu Cui, Tianyi Shan
MTLH: Video QoE Monitoring for Encrypted Traffic via Multi-Task Learning with Hierarchy. HPCC/DSS/SmartCity (2020)
Tianyu Cui, Pekka Marttinen, Samuel Kaski
Learning Global Pairwise Interactions with Bayesian Neural Networks. ECAI (2020)
Tianyu Cui, Chang Liu, Gaopeng Gou, Junzheng Shi, Gang Xiong
A Comprehensive Study of Accelerating IPv6 Deployment. IPCCC (2019)
Tianyu Cui, Pekka Marttinen, Samuel Kaski
Recovering Pairwise Interactions Using Neural Networks. CoRR (2019)
Tianyu Cui, Lin Zhang, Yan Huang, Ying Yi, Puwen Tan, Yue Zhao, Yongfei Hu, Liyan Xu, Enmin Li, Dong Wang
MNDR v2.0: an updated resource of ncRNA-disease associations in mammals. Nucleic Acids Res. 46 (Database-Issue) (2018)
Ying Yi, Yue Zhao, Chunhua Li, Lin Zhang, Huiying Huang, Yana Li, Lanlan Liu, Ping Hou, Tianyu Cui, Puwen Tan, Yongfei Hu, Ting Zhang, Yan Huang, Xiaobo Li, Jia Yu, Dong Wang
RAID v2.0: an updated resource of RNA-associated interactions across organisms. Nucleic Acids Res. 45 (Database-Issue) (2017)