Dong Wang

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 12

Top Topics

Diagnostic Tool

Attention Mechanism

Subcellular Localization

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Tianyuan Liu, Bohao Zou, Manman He, Yongfei Hu, Yiying Dou, Tianyu Cui, Puwen Tan, Shaobin Li, Shuan Rao, Yan Huang, Sixi Liu, Kaican Cai, Dong Wang
LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism. Briefings Bioinform. 24 (1) (2023)
Juanjuan Kang, Qiang Tang, Jun He, Le Li, Nianling Yang, Shuiyan Yu, Mengyao Wang, Yuchen Zhang, Jiahao Lin, Tianyu Cui, Yongfei Hu, Puwen Tan, Jun Cheng, Hailong Zheng, Dong Wang, Xi Su, Wei Chen, Yan Huang
RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. Nucleic Acids Res. 50 (D1) (2022)
Haibo Zhu, Hao Fu, Tianyu Cui, Lin Ning, Huaguo Shao, Yehan Guo, Yanting Ke, Jiayi Zheng, Hongyan Lin, Xin Wu, Guanghao Liu, Jun He, Xin Han, Wenlin Li, Xiaoyang Zhao, Huasong Lu, Dong Wang, Kongfa Hu, Xiaopei Shen
RNAPhaSep: a resource of RNAs undergoing phase separation. Nucleic Acids Res. 50 (D1) (2022)
Jun Cheng, Yunqing Lin, Linfu Xu, Kechen Chen, Qi Li, Kaixin Xu, Lin Ning, Juanjuan Kang, Tianyu Cui, Yan Huang, Xiaoyang Zhao, Dong Wang, Yanhui Li, Xi Su, Bin Yang
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation. Nucleic Acids Res. 50 (D1) (2022)
Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu, Hao Lin, Dong Wang
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Res. 50 (D1) (2022)
Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun Cheng, Yiying Dou, Dong Wang
MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. Nucleic Acids Res. 49 (Database-Issue) (2021)
Yang Zhang, Tianyuan Liu, Jing Wang, Bohao Zou, Le Li, Linhui Yao, Kechen Chen, Lin Ning, Bingyi Wu, Xiaoyang Zhao, Dong Wang
Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis. Bioinform. 37 (14) (2021)
Yan Huang, Jing Wang, Yue Zhao, Huafeng Wang, Tianyuan Liu, Yuhe Li, Tianyu Cui, Weiyi Li, Yige Feng, Jiaxin Luo, Jiaqi Gong, Lin Ning, Yong Zhang, Dong Wang, Yang Zhang
cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function. Nucleic Acids Res. 49 (Database-Issue) (2021)
Yunqing Lin, Tianyuan Liu, Tianyu Cui, Zhao Wang, Yuncong Zhang, Puwen Tan, Yan Huang, Jia Yu, Dong Wang
RNAInter in 2020: RNA interactome repository with increased coverage and annotation. Nucleic Acids Res. 48 (Database-Issue) (2020)
Tianyu Cui, Lin Zhang, Yan Huang, Ying Yi, Puwen Tan, Yue Zhao, Yongfei Hu, Liyan Xu, Enmin Li, Dong Wang
MNDR v2.0: an updated resource of ncRNA-disease associations in mammals. Nucleic Acids Res. 46 (Database-Issue) (2018)
Ting Zhang, Puwen Tan, Liqiang Wang, Nana Jin, Yana Li, Lin Zhang, Huan Yang, Zhenyu Hu, Lining Zhang, Chunyu Hu, Chunhua Li, Kun Qian, Changjian Zhang, Yan Huang, Kongning Li, Hao Lin, Dong Wang
RNALocate: a resource for RNA subcellular localizations. Nucleic Acids Res. 45 (Database-Issue) (2017)
Ying Yi, Yue Zhao, Chunhua Li, Lin Zhang, Huiying Huang, Yana Li, Lanlan Liu, Ping Hou, Tianyu Cui, Puwen Tan, Yongfei Hu, Ting Zhang, Yan Huang, Xiaobo Li, Jia Yu, Dong Wang
RAID v2.0: an updated resource of RNA-associated interactions across organisms. Nucleic Acids Res. 45 (Database-Issue) (2017)
Yanhui Li, Changliang Wang, Zhengqiang Miao, Xiaoman Bi, Deng Wu, Nana Jin, Liqiang Wang, Hao Wu, Kun Qian, Chunhua Li, Ting Zhang, Chunrui Zhang, Ying Yi, Hongyan Lai, Yongfei Hu, Lixin Cheng, Kwong-Sak Leung, Xiaobo Li, Fengmin Zhang, Kongning Li, Xia Li, Dong Wang
ViRBase: a resource for virus-host ncRNA-associated interactions. Nucleic Acids Res. 43 (Database-Issue) (2015)
Dong Wang, Lixin Cheng, Mingyue Wang, Ruihong Wu, Pengfei Li, Bin Li, Yuannv Zhang, Yunyan Gu, Wenyuan Zhao, Chenguang Wang, Zheng Guo
Extensive increase of microarray signals in cancers calls for novel normalization assumptions. Comput. Biol. Chem. 35 (3) (2011)
Zheng Guo, Lei Wang, Yongjin Li, Xue Gong, Chen Yao, Wencai Ma, Dong Wang, Yanhui Li, Jing Zhu, Min Zhang, Da Yang, Shaoqi Rao, Jing Wang
Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. Bioinform. 25 (12) (2009)
Min Zhang, Lin Zhang, Jinfeng Zou, Chen Yao, Hui Xiao, Qing Liu, Jing Wang, Dong Wang, Chenguang Wang, Zheng Guo
Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. Bioinform. 25 (13) (2009)
Da Yang, Yanhui Li, Hui Xiao, Qing Liu, Min Zhang, Jing Zhu, Wencai Ma, Chen Yao, Jing Wang, Dong Wang, Zheng Guo, Baofeng Yang
Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories. Bioinform. 24 (2) (2008)
Min Zhang, Chen Yao, Zheng Guo, Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li
Apparently low reproducibility of true differential expression discoveries in microarray studies. Bioinform. 24 (18) (2008)
Zheng Guo, Yongjin Li, Xue Gong, Chen Yao, Wencai Ma, Dong Wang, Yanhui Li, Jing Zhu, Min Zhang, Da Yang, Jing Wang
Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. Bioinform. 23 (16) (2007)
Dong Wang, Yingli Lv, Zheng Guo, Xia Li, Yanhui Li, Jing Zhu, Da Yang, Jianzhen Xu, Chenguang Wang, Shaoqi Rao, Baofeng Yang
Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules. Bioinform. 22 (23) (2006)