Layne T. Watson

ORCID

Publication Activity (10 Years)

Years Active: 1978-2023
Publications (10 Years): 37

Top Venues

ACM Trans. Math. Softw.

SpringSim (HPS)

SpringSim (HPC)

BMC Syst. Biol.

Publications

Hussain M. J. Almohri, Layne T. Watson
Model-Agnostic Federated Learning for Privacy-Preserving Systems. SecDev (2023)
Joungmin Choi, Ming Ji, Layne T. Watson, Liqing Zhang
DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation. Bioinform. 39 (5) (2023)
Thomas Lux, Layne T. Watson, Tyler H. Chang, William I. Thacker
Algorithm 1031: MQSI - Monotone Quintic Spline Interpolation. ACM Trans. Math. Softw. 49 (1) (2023)
Tyler H. Chang, Layne T. Watson, Jeffrey Larson, Nicole Neveu, William I. Thacker, Shubhangi G. Deshpande, Thomas C. H. Lux
Algorithm 1028: VTMOP: Solver for Blackbox Multiobjective Optimization Problems. ACM Trans. Math. Softw. 48 (3) (2022)
Chunrui Xu, Henry Hollis, Michelle Dai, Xiangyu Yao, Layne T. Watson, Yang Cao, Minghan Chen
Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle. PLoS Comput. Biol. 18 (1) (2022)
Hussain M. J. Almohri, Layne T. Watson, David Evans, Stephen C. Billups
Dynamic System Diversification for Securing Cloud-based IoT Subnetworks. ACM Trans. Auton. Adapt. Syst. 17 (2022)
Hussain M. J. Almohri, Layne T. Watson, Homa Alemzadeh, Mohammad Al-Mutawa
On Parallel Real-Time Security Improvement Using Mixed-Integer Programming. IEEE Access 9 (2021)
Thomas C. H. Lux, Layne T. Watson, Tyler H. Chang, Yili Hong, Kirk W. Cameron
Interpolation of sparse high-dimensional data. Numer. Algorithms 88 (1) (2021)
Layne T. Watson
Personal reflections on 50 years of scientific computing: 1967-2017. Int. J. Parallel Emergent Distributed Syst. 35 (2) (2020)
Hussain M. J. Almohri, Layne T. Watson, David Evans
Predictability of IP Address Allocations for Cloud Computing Platforms. IEEE Trans. Inf. Forensics Secur. 15 (2020)
Li Xu, Thomas Lux, Tyler H. Chang, Bo Li, Yili Hong, Layne T. Watson, Ali Raza Butt, Danfeng Yao, Kirk W. Cameron
Prediction of High-Performance Computing Input/Output Variability and Its Application to Optimization for System Configurations. CoRR (2020)
Negin Forouzesh, Layne T. Watson, Alexey V. Onufriev
Robustness of Multidimensional Optimization Outcomes: A General Approach and a Case Study. SpringSim (2020)
Hussain M. J. Almohri, Layne T. Watson, David Evans
An Attack-Resilient Architecture for the Internet of Things. IEEE Trans. Inf. Forensics Secur. 15 (2020)
Tyler H. Chang, Jeffrey Larson, Layne T. Watson, Thomas C. H. Lux
Managing Computationally Expensive Blackbox Multiobjective Optimization Problems Wwth Libensemble. SpringSim (2020)
Tyler H. Chang, Jeffrey Larson, Layne T. Watson
Multiobjective Optimization of the Variability of the High-Performance Linpack Solver. WSC (2020)
Thomas C. H. Lux, Layne T. Watson, Tyler H. Chang, Li Xu, Yueyao Wang, Yili Hong
An Algorithm for Constructing Monotone Quintic Interpolating Splines. SpringSim (2020)
Li Xu, Yueyao Wang, Thomas Lux, Tyler H. Chang, Jon Bernard, Bo Li, Yili Hong, Kirk W. Cameron, Layne T. Watson
Modeling I/O performance variability in high-performance computing systems using mixture distributions. J. Parallel Distributed Comput. 139 (2020)
Tyler H. Chang, Layne T. Watson, Thomas C. H. Lux, Ali Raza Butt, Kirk W. Cameron, Yili Hong
Algorithm 1012: DELAUNAYSPARSE: Interpolation via a Sparse Subset of the Delaunay Triangulation in Medium to High Dimensions. ACM Trans. Math. Softw. 46 (4) (2020)
Brandon D. Amos, David R. Easterling, Layne T. Watson, William I. Thacker, Brent S. Castle, Michael W. Trosset
Algorithm 1007: QNSTOP - Quasi-Newton Algorithm for Stochastic Optimization. ACM Trans. Math. Softw. 46 (2) (2020)
Mark A. Rucker, Layne T. Watson, Laura E. Barnes, Matthew S. Gerber
Human Apprenticeship Learning via Kernel-based Inverse Reinforcement Learning. CoRR (2020)
Layne T. Watson, Andrew Adamatzky
A half century of computing. Int. J. Parallel Emergent Distributed Syst. 35 (2) (2020)
Kirk W. Cameron, Ali Anwar, Yue Cheng, Li Xu, Bo Li, Uday Ananth, Jon Bernard, Chandler Jearls, Thomas Lux, Yili Hong, Layne T. Watson, Ali Raza Butt
MOANA: Modeling and Analyzing I/O Variability in Parallel System Experimental Design. IEEE Trans. Parallel Distributed Syst. 30 (8) (2019)
Minghan Chen, Brandon D. Amos, Layne T. Watson, John J. Tyson, Young Cao, Clifford A. Shaffer, Michael W. Trosset, Cihan Oguz, Gisella Kakoti
Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Tyler H. Chang, Layne T. Watson, Thomas C. H. Lux, Bo Li, Li Xu, Ali Raza Butt, Kirk W. Cameron, Yili Hong
A polynomial time algorithm for multivariate interpolation in arbitrary dimension via the Delaunay triangulation. ACM Southeast Regional Conference (2018)
Thomas C. H. Lux, Layne T. Watson, Tyler H. Chang, Jon Bernard, Bo Li, Xiaodong Yu, Li Xu, Godmar Back, Ali Raza Butt, Kirk W. Cameron, Danfeng Yao, Yili Hong
Novel meshes for multivariate interpolation and approximation. ACM Southeast Regional Conference (2018)
David R. Easterling, Layne T. Watson, Naren Ramakrishnan
Probability-one homotopy methods for constrained clustering. J. Comput. Appl. Math. 343 (2018)
Thomas C. H. Lux, Layne T. Watson, Tyler H. Chang, Jon Bernard, Bo Li, Li Xu, Godmar Back, Ali Raza Butt, Kirk W. Cameron, Yili Hong
Predictive modeling of I/O characteristics in high performance computing systems. SpringSim (HPC) (2018)
Thomas C. Jones Jr, Stefan Hoops, Layne T. Watson, Alida Palmisano, John J. Tyson, Clifford A. Shaffer
JigCell Model Connector: building large molecular network models from components. Simul. 94 (11) (2018)
Hussain M. J. Almohri, Layne T. Watson, David Evans
Misery Digraphs: Delaying Intrusion Attacks in Obscure Clouds. IEEE Trans. Inf. Forensics Secur. 13 (6) (2018)
Tyler H. Chang, Layne T. Watson, Thomas C. H. Lux, Jon Bernard, Bo Li, Li Xu, Godmar Back, Ali Raza Butt, Kirk W. Cameron, Yili Hong
Predicting system performance by interpolation using a high-dimensional delaunay triangulation. SpringSim (HPC) (2018)
Cihan Oguz, Layne T. Watson, William T. Baumann, John J. Tyson
Predicting network modules of cell cycle regulators using relative protein abundance statistics. BMC Syst. Biol. 11 (1) (2017)
Rishu Saxena, Layne T. Watson, Valerie A. Thomas, Randolph H. Wynne
Scaling constituent algorithms of a trend and change detection polyalgorithm. SpringSim (HPC) (2017)
Chaitra Raghunath, Tyler H. Chang, Layne T. Watson, Mohamed Jrad, Rakesh K. Kapania, Raymond M. Kolonay
Global deterministic and stochastic optimization in a service oriented architecture. SpringSim (HPC) (2017)
Mohammad Shabbir Hasan, Xiaowei Wu, Layne T. Watson, Zhiyi Li, Liqing Zhang
UPS-indel: A better approach for finding indel redundancy. ICCABS (2016)
Shubhangi G. Deshpande, Layne T. Watson, Robert A. Canfield
Multiobjective optimization using an adaptive weighting scheme. Optim. Methods Softw. 31 (1) (2016)
Shuo Wang, Yang Pu, Layne T. Watson, Yang Cao
Efficient implementation of the hybrid method for stochastic simulation of biochemical systems. CoRR (2016)
Hussain M. J. Almohri, Layne T. Watson, Danfeng Yao, Xinming Ou
Security Optimization of Dynamic Networks with Probabilistic Graph Modeling and Linear Programming. IEEE Trans. Dependable Secur. Comput. 13 (4) (2016)
Masha Sosonkina, Layne T. Watson, Jian He
Remark on Algorithm 897: VTDIRECT95: Serial and Parallel Codes for the Global Optimization Algorithm DIRECT. ACM Trans. Math. Softw. 41 (3) (2015)
Shubhangi G. Deshpande, Layne T. Watson, Nathan J. Love, Robert A. Canfield, Raymond M. Kolonay
Aircraft Design Markup Language for Multidisciplinary Aircraft Design and Analysis. J. Aerosp. Inf. Syst. 12 (2) (2015)
Seung In Park, Yong Cao, Layne T. Watson, Francis K. H. Quek
Performance analysis of a novel GPU computation-to-core mapping scheme for robust facet image modeling. J. Real Time Image Process. 10 (3) (2015)
Mingming Liu, Layne T. Watson, Liqing Zhang
HMMvar-func: a new method for predicting the functional outcome of genetic variants. BMC Bioinform. 16 (2015)
David R. Easterling, Layne T. Watson, Naren Ramakrishnan
An improved probability-one homotopy map for tracking constrained clustering solutions. SpringSim (HPS) (2015)
Alida Palmisano, Stefan Hoops, Layne T. Watson, Thomas C. Jones Jr, John J. Tyson, Clifford A. Shaffer
JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations. BMC Syst. Biol. 9 (2015)
Tae-Hyuk Ahn, Adrian Sandu, Layne T. Watson, Clifford A. Shaffer, Yang Cao, William T. Baumann
A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations. Int. J. Parallel Program. 43 (4) (2015)
Shubhangi G. Deshpande, Layne T. Watson
Multiobjective optimization using direct search techniques. SpringSim (HPS) (2014)
Mingming Liu, Layne T. Watson, Liqing Zhang
Classification of Mutations by Functional Impact Type: Gain of Function, Loss of Function, and Switch of Function. ISBRA (2014)
Brandon D. Amos, David R. Easterling, Layne T. Watson, Brent S. Castle, Michael W. Trosset, William I. Thacker
Fortran 95 implementation of QNSTOP for global and stochastic optimization. SpringSim (HPS) (2014)
Mahmud Shahriar Hossain, Manish Marwah, Amip Shah, Layne T. Watson, Naren Ramakrishnan
AutoLCA: A Framework for Sustainable Redesign and Assessment of Products. ACM Trans. Intell. Syst. Technol. 5 (2) (2014)
Mingming Liu, Layne T. Watson, Liqing Zhang
Quantitative prediction of the effect of genetic variation using hidden Markov models. BMC Bioinform. 15 (2014)
Alida Palmisano, Stefan Hoops, Layne T. Watson, Thomas C. Jones Jr, John J. Tyson, Clifford A. Shaffer
Multistate Model Builder (MSMB): a flexible editor for compact biochemical models. BMC Syst. Biol. 8 (2014)
Rhonda D. Phillips, Layne T. Watson, David R. Easterling, Randolph H. Wynne
An SMP soft classification algorithm for remote sensing. Comput. Geosci. 68 (2014)
T. M. Andrew, Brandon D. Amos, David R. Easterling, Cihan Oguz, William T. Baumann, John J. Tyson, Layne T. Watson
Global parameter estimation for a eukaryotic cell cycle model in systems biology. SummerSim (2014)
David R. Easterling, Layne T. Watson, Michael L. Madigan, Brent S. Castle, Michael W. Trosset
Parallel deterministic and stochastic global minimization of functions with very many minima. Comput. Optim. Appl. 57 (2) (2014)
David R. Easterling, Layne T. Watson, Naren Ramakrishnan
Tracking constrained clustering solutions with a probability-one homotopy map. SpringSim (HPS) (2014)
David Yang Gao, Layne T. Watson, David R. Easterling, William I. Thacker, Stephen C. Billups
Solving the canonical dual of box- and integer-constrained nonconvex quadratic programs via a deterministic direct search algorithm. Optim. Methods Softw. 28 (2) (2013)
Felipe Antonio Chegury Viana, Raphael T. Haftka, Layne T. Watson
Efficient global optimization algorithm assisted by multiple surrogate techniques. J. Glob. Optim. 56 (2) (2013)
Shubhangi G. Deshpande, Layne T. Watson, Robert A. Canfield
Pareto Front Approximation Using a Hybrid Approach. ICCS (2013)
Alex Verstak, Naren Ramakrishnan, Layne T. Watson, Jian He, Clifford A. Shaffer, Ananth Grama
Using hierarchical data mining to characterize performance of wireless system configurations. Adv. Eng. Softw. 65 (2013)
David R. Easterling, Mahmud Shahriar Hossain, Layne T. Watson, Naren Ramakrishnan
Probability-one homotopy maps for tracking constrained clustering solutions. SpringSim (HPC) (2013)
Masha Sosonkina, Layne T. Watson, Nicholas R. Radcliffe, Raphael T. Haftka, Michael W. Trosset
Adjusting process count on demand for petascale global optimization. Parallel Comput. 39 (1) (2013)
Mahmud Shahriar Hossain, Naren Ramakrishnan, Ian Davidson, Layne T. Watson
How to "alternatize" a clustering algorithm. Data Min. Knowl. Discov. 27 (2) (2013)
Layne T. Watson, Stephen C. Billups, John E. Mitchell, David R. Easterling
A Globally Convergent Probability-One Homotopy for Linear Programs with Linear Complementarity Constraints. SIAM J. Optim. 23 (2) (2013)
Cihan Oguz, Teeraphan Laomettachit, Katherine C. Chen, Layne T. Watson, William T. Baumann, John J. Tyson
Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model. BMC Syst. Biol. 7 (2013)
Mahmud Shahriar Hossain, Praveen Kumar Reddy Ojili, Cindy Grimm, Rolf Mueller, Layne T. Watson, Naren Ramakrishnan
Scatter/Gather Clustering: Flexibly Incorporating User Feedback to Steer Clustering Results. IEEE Trans. Vis. Comput. Graph. 18 (12) (2012)
Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
The effect of unhealthy β-cells in synchronized insulin secretion. BIBM (2012)
Rhonda D. Phillips, Layne T. Watson, Randolph H. Wynne, Naren Ramakrishnan
Continuous Iterative Guided Spectral Class Rejection Classification Algorithm. IEEE Trans. Geosci. Remote. Sens. 50 (6) (2012)
Rhonda D. Phillips, Layne T. Watson, Randolph H. Wynne
An SMP soft classification algorithm for remote sensing. SpringSim (HPC) (2011)
Nicholas R. Radcliffe, Layne T. Watson, Masha Sosonkina
A comparison of alternatives for communicating with spawned processes. ACM Southeast Regional Conference (2011)
Liqing Zhang, Layne T. Watson, Lenwood S. Heath
A Network of SCOP Hidden Markov Models and Its Analysis. BMC Bioinform. 12 (2011)
Shubhangi G. Deshpande, Layne T. Watson, Jiang Shu, Frederick A. Kamke, Naren Ramakrishnan
Data driven surrogate-based optimization in the problem solving environment WBCSim. Eng. Comput. 27 (3) (2011)
Nicholas R. Radcliffe, Masha Sosonkina, Layne T. Watson
Communication with spawned processes. SpringSim (HPC) (2011)
David R. Easterling, Layne T. Watson, Michael L. Madigan
Direct search versus simulated annealing on two high dimensional problems. SpringSim (HPC) (2011)
Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets. BIBE (2010)
Zhen Liu, Umme Juka Mobassera, Clifford A. Shaffer, Layne T. Watson, Yang Cao
Multistate modeling and simulation for regulatory networks. WSC (2010)
Shubhangi G. Deshpande, Layne T. Watson
Sequential approximate optimization in the problem solving environment WBCSim. SpringSim (2010)
William I. Thacker, Jingwei Zhang, Layne T. Watson, Jeffrey B. Birch, Manjula A. Iyer, Michael W. Berry
Algorithm 905: Modified Shepard Algorithm for Interpolation of Scattered Multivariate Data. ACM Trans. Math. Softw. 37 (3) (2010)
David R. Easterling, Layne T. Watson, Michael L. Madigan
The Direct Algorithm Applied to a Problem in Biomechanics with Conformal Mapping. CSC (2010)
Jingwei Zhang, Layne T. Watson, Yang Cao
A modified uniformization method for the solution of the chemical master equation. Comput. Math. Appl. 59 (1) (2010)
Liqing Zhang, Layne T. Watson
The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model. ISBRA (2010)
Yang Pu, Layne T. Watson, Yang Cao
Stiffness detection and reduction in discrete stochastic simulation of biochemical systems. SpringSim (2010)
Nicholas R. Radcliffe, David R. Easterling, Layne T. Watson, Michael L. Madigan, Kathleen A. Bieryla
Results of two global optimization algorithms applied to a problem in biomechanics. SpringSim (2010)
Seung In Park, Yong Cao, Layne T. Watson
A Novel Computation-to-core Mapping Scheme for Robust Facet Image Modeling on GPUs. PDPTA (2010)
Zhenwei Cao, David R. Easterling, Layne T. Watson, Dong Li, Kirk W. Cameron, Wu-chun Feng
Power saving experiments for large-scale global optimisation. Int. J. Parallel Emergent Distributed Syst. 25 (5) (2010)
Mahmud Shahriar Hossain, Satish Tadepalli, Layne T. Watson, Ian Davidson, Richard F. Helm, Naren Ramakrishnan
Unifying dependent clustering and disparate clustering for non-homogeneous data. KDD (2010)
Jingwei Zhang, Masha Sosonkina, Layne T. Watson, Yang Cao
Parallel solution of the chemical master equation. SpringSim (2009)
Zhenwei Cao, Layne T. Watson, Kirk W. Cameron, Rong Ge
A power aware study for VTDIRECT95 using DVFS. SpringSim (2009)
Tae-Hyuk Ahn, Pengyuan Wang, Layne T. Watson, Yang Cao, Clifford A. Shaffer, William T. Baumann
Stochastic cell cycle modeling for budding yeast. SpringSim (2009)
Jingwei Zhang, Layne T. Watson, Yang Cao
Radial Basis Function Collocation for the Chemical Master Equation. BIOCOMP (2009)
Rhonda D. Phillips, Layne T. Watson, Randolph H. Wynne
Examining the potential parallel scalability of a fuzzy semi-supervised classification algorithm. SpringSim (2009)
Jian He, Layne T. Watson, Masha Sosonkina
Algorithm 897: VTDIRECT95: Serial and parallel codes for the global optimization algorithm direct. ACM Trans. Math. Softw. 36 (3) (2009)
Yang Pu, Saangho Lee, Zhen Liu, David C. Samuels, Layne T. Watson, Yang Cao
Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell. BIOCOMP (2009)
Shihao Ji, Layne T. Watson, Lawrence Carin
Semisupervised Learning of Hidden Markov Models via a Homotopy Method. IEEE Trans. Pattern Anal. Mach. Intell. 31 (2) (2009)
Jian He, Alex Verstak, Layne T. Watson, Masha Sosonkina
Performance Modeling and Analysis of a Massively Parallel Direct - Part 1. Int. J. High Perform. Comput. Appl. 23 (1) (2009)
Jian He, Alex Verstak, Masha Sosonkina, Layne T. Watson
Performance Modeling and Analysis of a Massively Parallel Direct - Part 2. Int. J. High Perform. Comput. Appl. 23 (1) (2009)
Rhonda D. Phillips, Layne T. Watson, Randolph H. Wynne, Naren Ramakrishnan
A Hypothesis Test for the Evaluation of Soft Clusters for Classification. IPCV (2009)
Rhonda D. Phillips, Christine E. Blinn, Layne T. Watson, Randolph H. Wynne
An Adaptive Noise-Filtering Algorithm for AVIRIS Data With Implications for Classification Accuracy. IEEE Trans. Geosci. Remote. Sens. 47 (9) (2009)
Satish Tadepalli, Naren Ramakrishnan, Layne T. Watson, Bud Mishra, Richard F. Helm
Simultaneously Segmenting Multiple Gene Expression Time Courses by Analyzing Cluster Dynamics. J. Bioinform. Comput. Biol. 7 (2) (2009)
Rhonda D. Phillips, Layne T. Watson, Randolph H. Wynne, Naren Ramakrishnan
An Iterative Framework for the Improvement of Soft Clusters for Classificaction. IPCV (2009)
Jingwei Zhang, Layne T. Watson, Yang Cao
Adaptive aggregation method for the Chemical Master Equation. Int. J. Comput. Biol. Drug Des. 2 (2) (2009)
Jingwei Zhang, Layne T. Watson, Masha Sosonkina, Yang Cao
Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation. BIOCOMP (2008)

Layne T. Watson.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Layne T. Watson