Yang Cao

Publication Activity (10 Years)

Years Active: 2003-2021
Publications (10 Years): 9

Top Topics

Automated Discovery

Stochastic Simulation

Top Venues

Adv. Complex Syst.

Publications

Chunrui Xu, Yang Cao
. BCB (2021)
Chunrui Xu, Bronson R. Weston, John J. Tyson, Yang Cao
Cell cycle control and environmental response by second messengers in Caulobacter crescentus. BMC Bioinform. (14) (2020)
Minghan Chen, Yang Cao
Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application. BMC Bioinform. (12) (2019)
Mansooreh Ahmadian, John J. Tyson, Yang Cao
A stochastic model of size control in the budding yeast cell cycle. BMC Bioinform. (12) (2019)
Mansooreh Ahmadian, John J. Tyson, Yang Cao
A Stochastic Model of Size Control in the Budding Yeast Cell Cycle. BCB (2018)
Minghan Chen, Yang Cao
Analysis and Remedy of Negativity Problem in Hybrid Stochastic Simulation Algorithm and its Application: Extended Abstract. BCB (2018)
Youjia Fang, Xin Chen, Zheng Song, Tianzi Wang, Yang Cao
Modelling Propagation of Public Opinions on Microblogging Big Data Using Sentiment Analysis and Compartmental Models. Int. J. Semantic Web Inf. Syst. 13 (1) (2017)
Minghan Chen, Fei Li, Shuo Wang, Yang Cao
Stochastic Modeling and Simulation of Reaction-Diffusion System with Hill Function Dynamics. BCB (2016)
Shuo Wang, Yang Pu, Layne T. Watson, Yang Cao
Efficient implementation of the hybrid method for stochastic simulation of biochemical systems. CoRR (2016)
Minghan Chen, Fei Li, Kartik Subramanian, John J. Tyson, Yang Cao
. BCB (2015)
Tae-Hyuk Ahn, Adrian Sandu, Layne T. Watson, Clifford A. Shaffer, Yang Cao, William T. Baumann
A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations. Int. J. Parallel Program. 43 (4) (2015)
Fang Jin, Wei Wang, Liang Zhao, Edward R. Dougherty, Yang Cao, Chang-Tien Lu, Naren Ramakrishnan
Misinformation Propagation in the Age of Twitter. Computer 47 (12) (2014)
Fang Jin, Edward R. Dougherty, Parang Saraf, Yang Cao, Naren Ramakrishnan
Epidemiological modeling of news and rumors on Twitter. SNAKDD (2013)
Fei Li, Yang Cao
Multigrid discretization method for PopZ polarization in Caulobacter cell cycle. BIBM (2013)
Shuo Wang, Yang Cao
Efficient implementation of the hybrid method for stochastic simulation of biochemical systems. BCB (2012)
Dustin Arendt, Yang Cao
Evolutionary motifs for the Automated Discovery of Self-Organizing dimer Automata. Adv. Complex Syst. 15 (8) (2012)
Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
The effect of unhealthy β-cells in synchronized insulin secretion. BIBM (2012)
Zhen Liu, Yang Cao
Approximation of a multi-scale model based on multiple site phosphorylation. BIBM Workshops (2012)
Dustin Arendt, Yang Cao
Effective GPU Acceleration of Large Scale, Asynchronous Simulations on Graphs. Adv. Complex Syst. 15 (8) (2012)
Pilsung Kang, Naresh K. C. Selvarasu, Naren Ramakrishnan, Calvin J. Ribbens, Danesh K. Tafti, Yang Cao, Srinidhi Varadarajan
Implementing modular adaptation of scientific software. J. Comput. Sci. 3 (1-2) (2012)
Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets. BIBE (2010)
Zhen Liu, Umme Juka Mobassera, Clifford A. Shaffer, Layne T. Watson, Yang Cao
Multistate modeling and simulation for regulatory networks. WSC (2010)
Jingwei Zhang, Layne T. Watson, Yang Cao
A modified uniformization method for the solution of the chemical master equation. Comput. Math. Appl. 59 (1) (2010)
Yang Pu, Layne T. Watson, Yang Cao
Stiffness detection and reduction in discrete stochastic simulation of biochemical systems. SpringSim (2010)
Jingwei Zhang, Masha Sosonkina, Layne T. Watson, Yang Cao
Parallel solution of the chemical master equation. SpringSim (2009)
Tae-Hyuk Ahn, Pengyuan Wang, Layne T. Watson, Yang Cao, Clifford A. Shaffer, William T. Baumann
Stochastic cell cycle modeling for budding yeast. SpringSim (2009)
Jingwei Zhang, Layne T. Watson, Yang Cao
Radial Basis Function Collocation for the Chemical Master Equation. BIOCOMP (2009)
Yang Pu, Saangho Lee, Zhen Liu, David C. Samuels, Layne T. Watson, Yang Cao
Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell. BIOCOMP (2009)
Pilsung Kang, Yang Cao, Naren Ramakrishnan, Calvin J. Ribbens, Srinidhi Varadarajan
Modular implementation of adaptive decisions in stochastic simulations. SAC (2009)
Jingwei Zhang, Layne T. Watson, Yang Cao
Adaptive aggregation method for the Chemical Master Equation. Int. J. Comput. Biol. Drug Des. 2 (2) (2009)
Jingwei Zhang, Layne T. Watson, Masha Sosonkina, Yang Cao
Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation. BIOCOMP (2008)
Yong Ju Cho, Naren Ramakrishnan, Yang Cao
Reconstructing chemical reaction networks: data mining meets system identification. KDD (2008)
Jingwei Zhang, Layne T. Watson, Yang Cao
Adaptive aggregation method for the chemical master equation. BIBE (2008)
Pengyuan Wang, Ranjit Randhawa, Clifford A. Shaffer, Yang Cao, William T. Baumann
Converting macromolecular regulatory models from deterministic to stochastic formulation. SpringSim (2008)
Tae-Hyuk Ahn, Yang Cao, Layne T. Watson
Stochastic Simulation Algorithms for Chemical Reactions. BIOCOMP (2008)
Linda R. Petzold, Shengtai Li, Yang Cao, Radu Serban
Sensitivity analysis of differential-algebraic equations and partial differential equations. Comput. Chem. Eng. 30 (10-12) (2006)
Yang Cao, Linda R. Petzold
Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems. J. Comput. Phys. 212 (1) (2006)
Muruhan Rathinam, Linda R. Petzold, Yang Cao, Daniel T. Gillespie
Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems. Multiscale Model. Simul. 4 (3) (2005)
Yang Cao, Linda R. Petzold
A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method. SIAM J. Sci. Comput. 26 (2) (2004)
Yang Cao, Linda R. Petzold
A Subspace Error Estimate for Linear Systems. SIAM J. Matrix Anal. Appl. 24 (3) (2003)
Yang Cao, Shengtai Li, Linda R. Petzold, Radu Serban
Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution. SIAM J. Sci. Comput. 24 (3) (2003)