David C. Samuels

Publication Activity (10 Years)

Years Active: 2004-2021
Publications (10 Years): 13

Top Topics

Quality Control

High Throughput Sequencing

Top Venues

Briefings Bioinform.

Int. J. Medical Informatics

Publications

Lori Schirle, Alvin Jeffery, Ali Yaqoob, Sandra Sanchez-Roige, David C. Samuels
Two data-driven approaches to identifying the spectrum of problematic opioid use: A pilot study within a chronic pain cohort. Int. J. Medical Informatics 156 (2021)
Jie Ping, Olufunmilola Oyebamiji, Hui Yu, Scott Ness, Jeremy Chien, Fei Ye, Huining Kang, David C. Samuels, Sergey Ivanov, Danqian Chen, Ying-Yong Zhao, Yan Guo
MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data. Briefings Bioinform. 21 (4) (2020)
Hui Yu, Shilin Zhao, Scott Ness, Huining Kang, Quanhu Sheng, David C. Samuels, Olufunmilola Oyebamiji, Ying-Yong Zhao, Yan Guo
Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats. PLoS Comput. Biol. 16 (6) (2020)
Quanhu Sheng, David C. Samuels, Hui Yu, Scott Ness, Ying-Yong Zhao, Yan Guo
Cancer-specific expression quantitative loci are affected by expression dysregulation. Briefings Bioinform. 21 (1) (2020)
Chung-I Li, David C. Samuels, Ying-Yong Zhao, Yu Shyr, Yan Guo
Power and sample size calculations for high-throughput sequencing-based experiments. Briefings Bioinform. 19 (6) (2018)
Shilin Zhao, Jing Wang, David C. Samuels, Quanghu Sheng, Yu Shyr, Yan Guo
Strategies for processing and quality control of Illumina genotyping arrays. Briefings Bioinform. 19 (5) (2018)
Jing Wang, David C. Samuels, Yu Shyr, Yan Guo
StrandScript: evaluation of Illumina genotyping array design and strand correction. Bioinform. 33 (15) (2017)
Bing Feng, David C. Samuels, William Hoskins, Yan Guo, Yan Zhang, Jijun Tang, Zibo Meng
Down syndrome prediction/screening model based on deep learning and illumina genotyping array. BIBM (2017)
Pan Zhang, David C. Samuels, Brian D. Lehmann, Thomas Stricker, Jennifer A. Pietenpol, Yu Shyr, Yan Guo
Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data. Briefings Bioinform. 17 (2) (2016)
Leng Han, Kasey C. Vickers, David C. Samuels, Yan Guo
Alternative applications for distinct RNA sequencing strategies. Briefings Bioinform. 16 (4) (2015)
Jing Wang, David C. Samuels, Yu Shyr, Yan Guo
Population structure analysis on 2504 individuals across 26 ancestries using bioinformatics approaches. BMC Bioinform. 16 (S15) (2015)
Pan Zhang, David C. Samuels, Brian D. Lehmann, Thomas Stricker, Jennifer A. Pietenpol, Yu Shyr, Yan Guo
Practicality of identifying mitochondria variants from exome and RNAseq data. BMC Bioinform. 16 (S15) (2015)
Jing Wang, Leon Raskin, David C. Samuels, Yu Shyr, Yan Guo
Genome measures used for quality control are dependent on gene function and ancestry. Bioinform. 31 (3) (2015)
Yan Guo, Fei Ye, Quanghu Sheng, Travis Clark, David C. Samuels
Three-stage quality control strategies for DNA re-sequencing data. Briefings Bioinform. 15 (6) (2014)
Yan Guo, Jiang Li, Chung-I Li, Yu Shyr, David C. Samuels
MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis. Bioinform. 29 (9) (2013)
Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
The effect of unhealthy β-cells in synchronized insulin secretion. BIBM (2012)
Zhuo Song, Yang Cao, David C. Samuels
Replication Pauses of the Wild-Type and Mutant Mitochondrial DNA Polymerase Gamma: A Simulation Study. PLoS Comput. Biol. 7 (11) (2011)
Vishal V. Gandhi, David C. Samuels
Enzyme Kinetics of the Mitochondrial Deoxyribonucleoside Salvage Pathway Are Not Sufficient to Support Rapid mtDNA Replication. PLoS Comput. Biol. 7 (8) (2011)
Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets. BIBE (2010)
Yang Pu, Saangho Lee, Zhen Liu, David C. Samuels, Layne T. Watson, Yang Cao
Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell. BIOCOMP (2009)
Katherine V. Wendelsdorf, Zhuo Song, Yang Cao, David C. Samuels
An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcription Inhibitors. PLoS Comput. Biol. 5 (1) (2009)
Harsha Karur Rajasimha, David C. Samuels, Richard E. Nance
A Simulation Methodology in Modeling Cell Divisions with Stochastic Effects. WSC (2004)