Simone Pernice

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Topics

Stochastic Simulation

Corpus Callosum

Multiple Sclerosis

Top Venues

Publications

Simone Alessandri, Maria L. Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandrì
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications. BMC Bioinform. 25 (1) (2024)
Elvio Gilberto Amparore, Marco Beccuti, Paolo Castagno, Simone Pernice, Giuliana Franceschinis, Marzio Pennisi
From Compositional Petri Net Modeling to Macro and Micro Simulation by Means of Stochastic Simulation and Agent-Based Models. ACM Trans. Model. Perform. Evaluation Comput. Syst. 9 (1) (2024)
Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Francesco Sassi, Luca Alessandrì, Dora Tortarolo, Raffaele A. Calogero, Livio Trusolino, Andrea Bertotti, Marco Beccuti, Martina Olivero, Francesca Cordero
CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system. Bioinform. 39 (5) (2023)
Dora Tortarolo, Simone Pernice, Fabiana Clapero, Donatella Valdembri, Guido Serini, Federica Riccardo, Lidia Tarone, Chiara Enrico Bena, Carla Bosia, Sandro Gepiro Contaldo, Marco Beccuti, Marzio Pennisi, Francesca Cordero
OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data. BIBM (2023)
Carlo Alberto Barbano, Marco Beccuti, Francesca Cordero, Desislav Nikolaev Ivanov, Nicola Licheri, Simone Pernice, Alberto Presta, Riccardo Renzulli, Marco Grangetto
Artificial intelligence methods for biomedical imaging and omics data. Ital-IA (2023)
Simone Avesani, Vincenzo Bonnici, Simone Pernice, Marco Beccuti, Rosalba Giugno
MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems. CIKM (2023)
Simone Pernice, Alessandro Maglione, Dora Tortarolo, Roberta Sirovich, Marinella Clerico, Simona Rolla, Marco Beccuti, Francesca Cordero
A new computational workflow to guide personalized drug therapy. J. Biomed. Informatics 148 (2023)
Daniele Baccega, Simone Pernice, Pietro Terna, Paolo Castagno, Giovenale Moirano, Lorenzo Richiardi, Matteo Sereno, Sergio Rabellino, Milena Maria Maule, Marco Beccuti
An Agent-Based Model to Support Infection Control Strategies at School. J. Artif. Soc. Soc. Simul. 25 (3) (2022)
Marco Beccuti, Paolo Castagno, Giuliana Franceschinis, Marzio Pennisi, Simone Pernice
A Petri Net Formalism to Study Systems at Different Scales Exploiting Agent-Based and Stochastic Simulations. EPEW (2021)
Elvio Gilberto Amparore, Marco Beccuti, Paolo Castagno, Giuliana Franceschinis, Marzio Pennisi, Simone Pernice
Multiformalism modeling and simulation of immune system mechanisms. BIBM (2021)
Simone Pernice, Laura Follia, Gianfranco Balbo, Luciano Milanesi, Giulia Sartini, Niccoló Totis, Pietro Lió, Ivan Merelli, Francesca Cordero, Marco Beccuti
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice. Fundam. Informaticae 171 (1-4) (2020)
Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
Multiple Sclerosis disease: a computational approach for investigating its drug interactions. CoRR (2020)
Simone Pernice, Laura Follia, Alessandro Maglione, Marzio Pennisi, Francesco Pappalardo, Francesco Novelli, Marinella Clerico, Marco Beccuti, Francesca Cordero, Simona Rolla
Computational modeling of the immune response in multiple sclerosis using epimod framework. BMC Bioinform. (17) (2020)
Paolo Castagno, Simone Pernice, Gianni Ghetti, Massimiliano Povero, Lorenzo Pradelli, Daniela Paolotti, Gianfranco Balbo, Matteo Sereno, Marco Beccuti
A computational framework for modeling and studying pertussis epidemiology and vaccination. BMC Bioinform. (8) (2020)
Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions. CIBB (2019)
Simone Pernice, Greta Romano, Giulia Russo, Marco Beccuti, Marzio Pennisi, Francesco Pappalardo
Exploiting Stochastic Petri Net formalism to capture the Relapsing Remitting Multiple Sclerosis variability under Daclizumab administration. BIBM (2019)
Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Laura Follia, Simone Pernice
A Tool for the Automatic Derivation of Symbolic ODE from Symmetric Net Models. MASCOTS (2019)
Giulia Beatrice Piaggeschi, Nicola Licheri, Greta Romano, Simone Pernice, Laura Follia, Giulio Ferrero
MethylFASTQ: A Tool Simulating Bisulfite Sequencing Data. PDP (2019)
Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero
A computational approach based on the colored Petri net formalism for studying multiple sclerosis. BMC Bioinform. (6) (2019)
Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Simone Pernice
Deriving Symbolic Ordinary Differential Equations from Stochastic Symmetric Nets Without Unfolding. EPEW (2018)
Simone Pernice, Marco Beccuti, Pietro Do', Marzio Pennisi, Francesco Pappalardo
Estimating Daclizumab effects in Multiple Sclerosis using Stochastic Symmetric Nets. BIBM (2018)
Laura Follia, Fabio Tordini, Simone Pernice, Greta Romano, Giulia Beatrice Piaggeschi, Giulio Ferrero
ParallNormal: An Efficient Variant Calling Pipeline for Unmatched Sequencing Data. PDP (2018)
Marco Beccuti, Paolo Cazzaniga, Marzio Pennisi, Daniela Besozzi, Marco S. Nobile, Simone Pernice, Giulia Russo, Andrea Tangherloni, Francesco Pappalardo
GPU Accelerated Analysis of Treg-Teff Cross Regulation in Relapsing-Remitting Multiple Sclerosis. Euro-Par Workshops (2018)