Rosalba Giugno

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 45

Top Topics

Biological Networks

Graph Databases

Signal Transduction

Top Venues

J. Biomed. Informatics

Briefings Bioinform.

Publications

Emanuele Martorana, Roberto Grasso, Giovanni Micale, Salvatore Alaimo, Dennis E. Shasha, Rosalba Giugno, Alfredo Pulvirenti
Motif Finding Algorithms: A Performance Comparison. From Computational Logic to Computational Biology (2024)
Federica Cruciani, Antonino Aparo, Lorenza Brusini, Carlo Combi, Silvia Francesca Storti, Rosalba Giugno, Gloria Menegaz, Ilaria Boscolo Galazzo
Identifying the joint signature of brain atrophy and gene variant scores in Alzheimer's Disease. J. Biomed. Informatics 149 (2024)
Antonino Aparo, Vincenzo Bonnici, Simone Avesani, Luciano Cascione, Rosalba Giugno
DiGAS: Differential gene allele spectrum as a descriptor in genetic studies. Comput. Biol. Medicine 179 (2024)
Barbara Di Camillo, Rosalba Giugno
From translational bioinformatics computational methodologies to personalized medicine. J. Biomed. Informatics 151 (2024)
Manuel Tognon, Rosalba Giugno, Luca Pinello
A survey on algorithms to characterize transcription factor binding sites. Briefings Bioinform. 24 (3) (2023)
Simone Avesani, Vincenzo Bonnici, Simone Pernice, Marco Beccuti, Rosalba Giugno
MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems. CIKM (2023)
Leonardo Fraccaroli, Rosalba Giugno, Samuele Cancellieri, Federico Busato, Nicola Bombieri
FAST-CON: a Multi-source Approach for Efficient S- T Connectivity on Sparse Graphs. HPEC (2023)
Vincenzo Bonnici, Claudia Mengoni, Manuel Mangoni, Giuditta Franco, Rosalba Giugno
PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies. J. Biomed. Informatics 148 (2023)
Eva Viesi, Davide S. Sardina, Ugo Perricone, Rosalba Giugno
APDB: a database on air pollutant characterization and similarity prediction. Database J. Biol. Databases Curation 2023 (2023)
Barbara Di Camillo, Rosalba Giugno
From translational bioinformatics computational methodologies to personalized medicine. J. Biomed. Informatics 133 (2022)
Ramón Díaz-Uriarte, Elisa Gómez de Lope, Rosalba Giugno, Holger Fröhlich, Petr V. Nazarov, Isabel A. Nepomuceno-Chamorro, Armin Rauschenberger, Enrico Glaab
Ten quick tips for biomarker discovery and validation analyses using machine learning. PLoS Comput. Biol. 18 (8) (2022)
Vincenzo Bonnici, Emiliano Maresi, Rosalba Giugno
Challenges in gene-oriented approaches for pangenome content discovery. Briefings Bioinform. 22 (3) (2021)
Nicola Licheri, Elvio Amparone, Vincenzo Bonnici, Rosalba Giugno, Marco Beccuti
An Entropy Heuristic to Optimize Decision Diagrams for Index-driven Search in Biological Graph Databases. CIKM Workshops (2021)
Nicola Bombieri, Silvia Scaffeo, Antonio Mastrandrea, Simone Caligola, Tommaso Carlucci, Franco Fummi, Carlo Laudanna, Gabriela Constantin, Rosalba Giugno
SystemC Implementation of Stochastic Petri Nets for Simulation and Parameterization of Biological Networks. ACM Trans. Embed. Comput. Syst. 20 (4) (2021)
Marco Beccuti, Vincenzo Bonnici, Rosalba Giugno
MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems. CIKM (2021)
Guglielmo Cerri, Manuel Tognon, André Altmann, Rosalba Giugno
Mining genetic, transcriptomic and imaging data in Parkinson's disease. ICHI (2021)
Antonino Aparo, Pietro Sala, Vincenzo Bonnici, Rosalba Giugno
TEDAR: Temporal dynamic signal detection of adverse reactions. Artif. Intell. Medicine 122 (2021)
Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs. PLoS Comput. Biol. 17 (9) (2021)
Nicola Licheri, Vincenzo Bonnici, Marco Beccuti, Rosalba Giugno
GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases. BMC Bioinform. 22 (1) (2021)
Samuele Cancellieri, Matthew C. Canver, Nicola Bombieri, Rosalba Giugno, Luca Pinello
CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing. Bioinform. 36 (7) (2020)
Giovanni Micale, Vincenzo Bonnici, Alfredo Ferro, Dennis E. Shasha, Rosalba Giugno, Alfredo Pulvirenti
MultiRI: Fast Subgraph Matching in Labeled Multigraphs. CoRR (2020)
Shraddha Pai, Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks. F1000Research 9 (2020)
Giovanni Micale, Alfredo Pulvirenti, Alfredo Ferro, Rosalba Giugno, Dennis E. Shasha
Fast methods for finding significant motifs on labelled multi-relational networks. J. Complex Networks 7 (6) (2019)
Nicola Bombieri, Antonio Mastrandrea, Silvia Scaffeo, Simone Caligola, Franco Fummi, Carlo Laudanna, Gabriela Constantin, Rosalba Giugno
On the Simulation and Automatic Parametrization of Metabolic Networks Through Electronic Design Automation. CIBB (2019)
Vincenzo Bonnici, Simone Caligola, Giulia Fiorini, Luca Giudice, Rosalba Giugno
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis. CIBCB (2019)
Simone Caligola, Tommaso Carlucci, Franco Fummi, Carlo Laudanna, Gabriela Constantin, Nicola Bombieri, Rosalba Giugno
Efficient Simulation and Parametrization of Stochastic Petri Nets in SystemC: A Case study from Systems Biology. FDL (2019)
Simone Caligola, Tommaso Carlucci, Franco Fummi, Carlo Laudanna, Gabriela Constantin, Nicola Bombieri, Rosalba Giugno
Automatic Parameterization of the Purine Metabolism Pathway through Discrete Event-based Simulation. CIBCB (2019)
Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. (4) (2019)
Giulia Pontali, Luciano Cascione, Alberto J. Arribas, Andrea Rinaldi, Francesco Bertoni, Rosalba Giugno
A Reliable Method to Remove Batch Effects Maintaining Group Differences in Lymphoma Methylation Case Study. IWBBIO (2) (2019)
Nicola Bombieri, Vincenzo Bonnici, Rosalba Giugno
Parallel Searching on Biological Networks. PDP (2019)
Vincenzo Bonnici, Rosalba Giugno, Nicola Bombieri
An Efficient Implementation of a Subgraph Isomorphism Algorithm for GPUs. BIBM (2018)
Nicola Lettieri, Antonio Altamura, Rosalba Giugno, Alfonso Guarino, Delfina Malandrino, Alfredo Pulvirenti, Francesco Vicidomini, Rocco Zaccagnino
: Analytical platforms, Law and the Challenges of Computational Legal Science. Future Internet 10 (5) (2018)
Vincenzo Bonnici, Giorgio De Caro, Giorgio Constantino, Sabino Liuni, Domenica D'Elia, Nicola Bombieri, Flavio Licciulli, Rosalba Giugno
Arena-Idb: a platform to build human non-coding RNA interaction networks. BMC Bioinform. (10) (2018)
Antonino Aparo, Vincenzo Bonnici, Giovanni Micale, Alfredo Ferro, Dennis E. Shasha, Alfredo Pulvirenti, Rosalba Giugno
Simple Pattern-only Heuristics Lead to Fast Subgraph Matching Strategies on Very Large Networks. PACBB (2018)
Davide S. Sardina, Giovanni Micale, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
INBIA: a boosting methodology for proteomic network inference. BMC Bioinform. (7) (2018)
Vincenzo Bonnici, Simone Caligola, Antonino Aparo, Rosalba Giugno
Centrality Speeds the Subgraph Isomorphism Search Up in Target Aware Contexts. CIBB (2018)
Giovanni Micale, Rosalba Giugno, Alfredo Ferro, Misael Mongiovì, Dennis E. Shasha, Alfredo Pulvirenti
Fast analytical methods for finding significant labeled graph motifs. Data Min. Knowl. Discov. 32 (2) (2018)
Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno
cuRnet: an R package for graph traversing on GPU. BMC Bioinform. (10) (2018)
Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno
Correction to: cuRnet: an R package for graph traversing on GPU. BMC Bioinform. 19 (1) (2018)
Francesco Russo, Sebastiano Di Bella, Federica Vannini, Gabriele Berti, Flavia Scoyni, Helen Cook, Alberto Santos, Giovanni Nigita, Vincenzo Bonnici, Alessandro Laganà, Filippo Geraci, Alfredo Pulvirenti, Rosalba Giugno, Federico De Masi, Kirstine Belling, Lars Juhl Jensen, Søren Brunak, Marco Pellegrini, Alfredo Ferro
miRandola 2017: a curated knowledge base of non-invasive biomarkers. Nucleic Acids Res. 46 (Database-Issue) (2018)
Vincenzo Bonnici, Rosalba Giugno
On the Variable Ordering in Subgraph Isomorphism Algorithms. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (1) (2017)
Davide S. Sardina, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
A novel computational method for inferring competing endogenous interactions. Briefings Bioinform. 18 (6) (2017)
Daniele Coati, Rosario Distefano, Nicola Bombieri, Franco Fummi, Michela Mirenda, Carlo Laudanna, Rosalba Giugno
A SystemC-based platform for assertion-based verification and mutation analysis in systems biology. LATS (2016)
Vincenzo Bonnici, Federico Busato, Giovanni Micale, Nicola Bombieri, Alfredo Pulvirenti, Rosalba Giugno
APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks. Bioinform. 32 (14) (2016)
Rosario Distefano, Nickolas Goncharenko, Franco Fummi, Rosalba Giugno, Gary D. Bader, Nicola Bombieri
SyQUAL: a platform for qualitative modelling and simulation of biological systems. HLDVT (2016)
Rosario Distefano, Franco Fummi, Carlo Laudanna, Nicola Bombieri, Rosalba Giugno
A SystemC Platform for Signal Transduction Modelling and Simulation in Systems Biology. ACM Great Lakes Symposium on VLSI (2015)
Alfredo Pulvirenti, Rosalba Giugno, Rosario Distefano, Giuseppe Pigola, Misael Mongiovì, Girolamo Giudice, Vera Vendramin, Alessandro Lombardo, Federica Cattonaro, Alfredo Ferro
A knowledge base for Vitis vinifera functional analysis. BMC Syst. Biol. 9 (S-3) (2015)
Anna P. Privitera, Rosario Distefano, Hugo A. Wefer, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder. Database J. Biol. Databases Curation 2015 (2015)
Salvatore Alaimo, Rosalba Giugno, Mario Acunzo, Dario Veneziano, Alfredo Ferro, Alfredo Pulvirenti
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. CoRR (2015)
Fabio Rinnone, Giovanni Micale, Vincenzo Bonnici, Gary D. Bader, Dennis E. Shasha, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
NetMatchStar: an enhanced Cytoscape network querying app. F1000Research 4 (2015)
Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference. BMC Syst. Biol. 9 (S-3) (2015)
Giovanni Micale, Andrea Continella, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti
GASOLINE: a Cytoscape app for multiple local alignment of PPI networks. F1000Research 3 (2014)
Nicola Bombieri, Rosario Distefano, Giovanni Scardoni, Franco Fummi, Carlo Laudanna, Rosalba Giugno
Dynamic Modeling and Simulation of Leukocyte Integrin Activation through an Electronic Design Automation Framework. CMSB (2014)
Rosario Distefano, Giovanni Nigita, Valentina Macca, Alessandro Laganà, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro
VIRGO: visualization of A-to-I RNA editing sites in genomic sequences. BMC Bioinform. 14 (S-7) (2013)
Vincenzo Bonnici, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha, Alfredo Ferro
A subgraph isomorphism algorithm and its application to biochemical data. BMC Bioinform. 14 (S-7) (2013)
Carmela Gissi, Paolo Romano, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti, Angelo M. Facchiano, Manuela Helmer-Citterich
Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 14 (S-7) (2013)
Carmelo Cassisi, Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Alfredo Pulvirenti
Enhancing density-based clustering: Parameter reduction and outlier detection. Inf. Syst. 38 (3) (2013)
Salvatore Alaimo, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro
Drug-target interaction prediction through domain-tuned network-based inference. Bioinform. 29 (16) (2013)
Alessandro Laganà, Alessio Paone, Dario Veneziano, Luciano Cascione, Pierluigi Gasparini, Stefania Carasi, Francesco Russo, Giovanni Nigita, Valentina Macca, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha, Alfredo Ferro, Carlo Maria Croce
miR-EdiTar: a database of predicted A-to-I edited miRNA target sites. Bioinform. 28 (23) (2012)
Paolo Romano, Rosalba Giugno, Alfredo Pulvirenti
Tools and collaborative environments for bioinformatics research. Briefings Bioinform. 12 (6) (2011)
S. Cristaldi, Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Alfredo Pulvirenti
Obstacles constrained group mobility models in event-driven wireless networks with movable base stations. Ad Hoc Networks 9 (3) (2011)
Marco Aliotta, Andrea Cannata, Carmelo Cassisi, Rosalba Giugno, Placido Montalto, Alfredo Pulvirenti
DBStrata: a system for density-based clustering and outlier detection based on stratification. SISAP (2011)
Paolo Romano, Rosalba Giugno, Alfredo Pulvirenti
Editorial. Briefings Bioinform. 12 (6) (2011)
Raffaele Di Natale, Alfredo Ferro, Rosalba Giugno, Misael Mongiovì, Alfredo Pulvirenti, Dennis E. Shasha
SING: Subgraph search In Non-homogeneous Graphs. BMC Bioinform. 11 (2010)
Daniel Felipe Rivas, David S. Corchuelo, Cristhian Figueroa, Juan Carlos Corrales, Rosalba Giugno
Business Process Model Retrieval Based on Graph Indexing Method. Business Process Management Workshops (2010)
Misael Mongiovì, Raffaele Di Natale, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro, Roded Sharan
Sigma: a Set-Cover-Based Inexact Graph Matching Algorithm. J. Bioinform. Comput. Biol. 8 (2) (2010)
Alfredo Ferro, Rosalba Giugno, Piera Laura Puglisi, Alfredo Pulvirenti
MySQL Data Mining: Extending MySQL to Support Data Mining Primitives (Demo). KES (3) (2010)
Alfredo Ferro, Rosalba Giugno, Piera Laura Puglisi, Alfredo Pulvirenti
An Efficient Duplicate Record Detection Using q-Grams Array Inverted Index. DaWak (2010)
Vincenzo Bonnici, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha
Enhancing Graph Database Indexing by Suffix Tree Structure. PRIB (2010)
Alfredo Ferro, Rosalba Giugno, Piera Laura Puglisi, Alfredo Pulvirenti
BitCube: A Bottom-Up Cubing Engineering. DaWaK (2009)
Alessandro Laganà, Stefano Forte, A. Giudice, M. R. Arena, Piera Laura Puglisi, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha, Alfredo Ferro
miRò: a miRNA knowledge base. Database J. Biol. Databases Curation 2009 (2009)
Alfredo Ferro, Rosalba Giugno, Misael Mongiovì, Alfredo Pulvirenti
Distributed randomized algorithms for low-support data mining. IPDPS (2009)
Alfredo Ferro, Rosalba Giugno, Misael Mongiovì, Alfredo Pulvirenti, Dmitry Skripin, Dennis E. Shasha
GraphFind: enhancing graph searching by low support data mining techniques. BMC Bioinform. 9 (S-4) (2008)
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Alfredo Pulvirenti, Cinzia Di Pietro, Michele Purrello, Marco Ragusa
Sequence similarity is more relevant than species specificity in probabilistic backtranslation. BMC Bioinform. 8 (2007)
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Alfredo Pulvirenti, Dmitry Skripin, Gary D. Bader, Dennis E. Shasha
NetMatch: a Cytoscape plugin for searching biological networks. Bioinform. 23 (7) (2007)
Alfredo Ferro, Rosalba Giugno, Misael Mongiovì, Giuseppe Pigola, Alfredo Pulvirenti
Distributed antipole clustering for efficient data search and management in Euclidean and metric spaces. IPDPS (2006)
Domenico Cantone, Alfredo Ferro, Rosalba Giugno, Giuseppe Lo Presti, Alfredo Pulvirenti
Multiple-Winners Randomized Tournaments with Consensus for Optimization Problems in Generic Metric Spaces. WEA (2005)
Rosalba Giugno, Alfredo Pulvirenti, Diego Reforgiato Recupero
Clustered Trie Structures for Approximate Search in Hierarchical Objects Collections. ICAPR (1) (2005)
Rosalba Giugno, Alfredo Pulvirenti, Marco Ragusa, Loredana Facciola, Laura Patelmo, Valentina Di Pietro, Cinzia Di Pietro, Michele Purrello, Alfredo Ferro
Locally sensitive backtranslation based on multiple sequence alignment. CIBCB (2004)
Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti
Efficient Boundary Values Generation in General Metric Spaces for Software Component Testing. Verification: Theory and Practice (2003)
Veronica Biazzo, Rosalba Giugno, Thomas Lukasiewicz, V. S. Subrahmanian
Temporal Probabilistic Object Bases. IEEE Trans. Knowl. Data Eng. 15 (4) (2003)
Rosalba Giugno, Thomas Lukasiewicz
P-SHOQ(D): A Probabilistic Extension of SHOQ(D) for Probabilistic Ontologies in the Semantic Web. JELIA (2002)
Rosalba Giugno, Dennis E. Shasha
GraphGrep: A Fast and Universal Method for Querying Graphs. ICPR (2) (2002)
Dennis E. Shasha, Jason Tsong-Li Wang, Rosalba Giugno
Algorithmics and Applications of Tree and Graph Searching. PODS (2002)
Alfredo Ferro, Giovanni Gallo, Rosalba Giugno, Alfredo Pulvirenti
Best-Match Retrieval for Structured Images. IEEE Trans. Pattern Anal. Mach. Intell. 23 (7) (2001)
Alfredo Ferro, Giovanni Gallo, Rosalba Giugno
Approximate search in image database. Storage and Retrieval for Media Databases (2000)
Alfredo Ferro, Giovanni Gallo, Rosalba Giugno
Error-Tolerant Database for Structured Images. VISUAL (1999)
Giovanni Gallo, Salvatore Garraffo, Rosalba Giugno, Angelo Nicolosi
Looking for the Lost Follis. Eurographics (Short Presentations) (1999)