Vincenzo Bonnici

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 30

Top Topics

Biological Networks

Graph Databases

Kullback Leibler

Top Venues

Artif. Intell. Medicine

Publications

Antonino Aparo, Vincenzo Bonnici, Simone Avesani, Luciano Cascione, Rosalba Giugno
DiGAS: Differential gene allele spectrum as a descriptor in genetic studies. Comput. Biol. Medicine 179 (2024)
Vincenzo Bonnici, Vincenzo Arceri, Alessio Diana, Flavio Bertini, Eleonora Iotti, Alessia Levante, Valentina Bernini, Erasmo Neviani, Alessandro Dal Palù
BIOCHAIN: towards a platform for securely sharing microbiological data. IDEAS (2023)
Giacomo Boldini, Alessio Diana, Vincenzo Arceri, Vincenzo Bonnici, Roberto Bagnara
A Machine Learning Approach for Source Code Similarity via Graph-Focused Features. LOD (1) (2023)
Silvia Astorino, Vincenzo Bonnici, Giuditta Franco
An Investigation to Test Spectral Segments as Bacterial Biomarkers. UCNC (2023)
Simone Avesani, Vincenzo Bonnici, Simone Pernice, Marco Beccuti, Rosalba Giugno
MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems. CIKM (2023)
Vincenzo Bonnici, Claudia Mengoni, Manuel Mangoni, Giuditta Franco, Rosalba Giugno
PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies. J. Biomed. Informatics 148 (2023)
Vincenzo Bonnici, Emiliano Maresi, Rosalba Giugno
Challenges in gene-oriented approaches for pangenome content discovery. Briefings Bioinform. 22 (3) (2021)
Vincenzo Bonnici, Giuditta Franco, Vincenzo Manca
Spectral concepts in genome informational analysis. CoRR (2021)
Nicola Licheri, Elvio Amparone, Vincenzo Bonnici, Rosalba Giugno, Marco Beccuti
An Entropy Heuristic to Optimize Decision Diagrams for Index-driven Search in Biological Graph Databases. CIKM Workshops (2021)
Marco Beccuti, Vincenzo Bonnici, Rosalba Giugno
MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems. CIKM (2021)
Vincenzo Bonnici, Andrea Cracco, Giuditta Franco
A k-mer Based Sequence Similarity for Pangenomic Analyses. LOD (2021)
Antonino Aparo, Pietro Sala, Vincenzo Bonnici, Rosalba Giugno
TEDAR: Temporal dynamic signal detection of adverse reactions. Artif. Intell. Medicine 122 (2021)
Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs. PLoS Comput. Biol. 17 (9) (2021)
Nicola Licheri, Vincenzo Bonnici, Marco Beccuti, Rosalba Giugno
GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases. BMC Bioinform. 22 (1) (2021)
Vincenzo Bonnici, Giuditta Franco, Vincenzo Manca
Spectral concepts in genome informational analysis. Theor. Comput. Sci. 894 (2021)
Vincenzo Bonnici
A maximum value for the Kullback-Leibler divergence between quantum discrete distributions. CoRR (2020)
Giovanni Micale, Vincenzo Bonnici, Alfredo Ferro, Dennis E. Shasha, Rosalba Giugno, Alfredo Pulvirenti
MultiRI: Fast Subgraph Matching in Labeled Multigraphs. CoRR (2020)
Vincenzo Bonnici, Giuditta Franco, Vincenzo Manca
A word recurrence based algorithm to extract genomic dictionaries. CoRR (2020)
Vincenzo Bonnici, Simone Caligola, Giulia Fiorini, Luca Giudice, Rosalba Giugno
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis. CIBCB (2019)
Nicola Bombieri, Vincenzo Bonnici, Rosalba Giugno
Parallel Searching on Biological Networks. PDP (2019)
Vincenzo Bonnici, Rosalba Giugno, Nicola Bombieri
An Efficient Implementation of a Subgraph Isomorphism Algorithm for GPUs. BIBM (2018)
Vincenzo Bonnici, Giorgio De Caro, Giorgio Constantino, Sabino Liuni, Domenica D'Elia, Nicola Bombieri, Flavio Licciulli, Rosalba Giugno
Arena-Idb: a platform to build human non-coding RNA interaction networks. BMC Bioinform. (10) (2018)
Antonino Aparo, Vincenzo Bonnici, Giovanni Micale, Alfredo Ferro, Dennis E. Shasha, Alfredo Pulvirenti, Rosalba Giugno
Simple Pattern-only Heuristics Lead to Fast Subgraph Matching Strategies on Very Large Networks. PACBB (2018)
Vincenzo Bonnici, Vincenzo Manca
An Informational Test for Random Finite Strings. Entropy 20 (12) (2018)
Vincenzo Bonnici, Simone Caligola, Antonino Aparo, Rosalba Giugno
Centrality Speeds the Subgraph Isomorphism Search Up in Target Aware Contexts. CIBB (2018)
Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno
cuRnet: an R package for graph traversing on GPU. BMC Bioinform. (10) (2018)
Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno
Correction to: cuRnet: an R package for graph traversing on GPU. BMC Bioinform. 19 (1) (2018)
Francesco Russo, Sebastiano Di Bella, Federica Vannini, Gabriele Berti, Flavia Scoyni, Helen Cook, Alberto Santos, Giovanni Nigita, Vincenzo Bonnici, Alessandro Laganà, Filippo Geraci, Alfredo Pulvirenti, Rosalba Giugno, Federico De Masi, Kirstine Belling, Lars Juhl Jensen, Søren Brunak, Marco Pellegrini, Alfredo Ferro
miRandola 2017: a curated knowledge base of non-invasive biomarkers. Nucleic Acids Res. 46 (Database-Issue) (2018)
Vincenzo Bonnici, Rosalba Giugno
On the Variable Ordering in Subgraph Isomorphism Algorithms. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (1) (2017)
Vincenzo Bonnici, Federico Busato, Giovanni Micale, Nicola Bombieri, Alfredo Pulvirenti, Rosalba Giugno
APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks. Bioinform. 32 (14) (2016)
Fabio Rinnone, Giovanni Micale, Vincenzo Bonnici, Gary D. Bader, Dennis E. Shasha, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
NetMatchStar: an enhanced Cytoscape network querying app. F1000Research 4 (2015)
Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference. BMC Syst. Biol. 9 (S-3) (2015)
Vincenzo Bonnici, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha, Alfredo Ferro
A subgraph isomorphism algorithm and its application to biochemical data. BMC Bioinform. 14 (S-7) (2013)
Vincenzo Bonnici, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha
Enhancing Graph Database Indexing by Suffix Tree Structure. PRIB (2010)