Salvatore Alaimo

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 13

Top Topics

Top Venues

Briefings Bioinform.

Publications

Emanuele Martorana, Roberto Grasso, Giovanni Micale, Salvatore Alaimo, Dennis E. Shasha, Rosalba Giugno, Alfredo Pulvirenti
Motif Finding Algorithms: A Performance Comparison. From Computational Logic to Computational Biology (2024)
Giorgio Locicero, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti
MASFENON: Multi-Agent Adaptive Simulation Framework for Evolution in Networks of Networks. BIBM (2023)
Elisabetta C. Sciacca, Salvatore Alaimo, Gianmarco Silluzio, Alfredo Ferro, Vito Latora, Costantino Pitzalis, Alfredo Pulvirenti, Myles J. Lewis
DEGGs: an R package with shiny app for the identification of differentially expressed gene-gene interactions in high-throughput sequencing data. Bioinform. 39 (4) (2023)
Ilaria Cosentini, Vincenza Barresi, Daniele Filippo Condorelli, Alfredo Ferro, Alfredo Pulvirenti, Salvatore Alaimo
COMBO: A Computational Framework to Analyze RNA-seq and Methylation Data Through Heterogeneous Multi-layer Networks. COMPLEX NETWORKS (1) (2022)
Grete Francesca Privitera, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti
Virus finding tools: current solutions and limitations. Briefings Bioinform. 23 (4) (2022)
Alessandro Muscolino, Antonio Di Maria, Rosaria Valentina Rapicavoli, Salvatore Alaimo, Lorenzo Bellomo, Fabrizio Billeci, Stefano Borzi, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti
NETME: on-the-fly knowledge network construction from biomedical literature. Appl. Netw. Sci. 7 (1) (2022)
Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinform. 22 (1) (2021)
Salvatore Alaimo, Rosaria Valentina Rapicavoli, Gioacchino P. Marceca, Alessandro La Ferlita, Oksana B. Serebrennikova, Philip N. Tsichlis, Bud Mishra, Alfredo Pulvirenti, Alfredo Ferro
PHENSIM: Phenotype Simulator. PLoS Comput. Biol. 17 (6) (2021)
Alessandro Muscolino, Antonio Di Maria, Salvatore Alaimo, Stefano Borzi, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti
NETME: On-the-Fly Knowledge Network Construction from Biomedical Literature. COMPLEX NETWORKS (2) (2020)
Sebastiano Di Bella, Alessandro La Ferlita, Giovanni Carapezza, Salvatore Alaimo, Antonella Isacchi, Alfredo Ferro, Alfredo Pulvirenti, Roberta Bosotti
A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data. Briefings Bioinform. 21 (6) (2020)
Alessandro La Ferlita, Salvatore Alaimo, Dario Veneziano, Giovanni Nigita, Veronica Balatti, Carlo Maria Croce, Alfredo Ferro, Alfredo Pulvirenti
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer. Database J. Biol. Databases Curation 2019 (2019)
Salvatore Alaimo, Antonio Di Maria, Dennis E. Shasha, Alfredo Ferro, Alfredo Pulvirenti
TACITuS: transcriptomic data collector, integrator, and selector on big data platform. BMC Bioinform. (9) (2019)
Davide S. Sardina, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
A novel computational method for inferring competing endogenous interactions. Briefings Bioinform. 18 (6) (2017)
Salvatore Alaimo, Rosalba Giugno, Mario Acunzo, Dario Veneziano, Alfredo Ferro, Alfredo Pulvirenti
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. CoRR (2015)
Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference. BMC Syst. Biol. 9 (S-3) (2015)
Salvatore Alaimo, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro
Drug-target interaction prediction through domain-tuned network-based inference. Bioinform. 29 (16) (2013)