Erik Garrison

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 19

Top Topics

Interactive Visualizations

Graph Theoretic

Top Venues

PLoS Comput. Biol.

Publications

Santiago Marco-Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó
) space. Bioinform. 39 (2) (2023)
Njagi Moses Mwaniki, Erik Garrison, Nadia Pisanti
Fast Exact String to D-Texts Alignments. BIOINFORMATICS (2023)
Bryce Kille, Erik Garrison, Todd J. Treangen, Adam M. Phillippy
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation. Bioinform. 39 (9) (2023)
Erik Garrison, Andrea Guarracino
Unbiased pangenome graphs. Bioinform. 39 (1) (2023)
Erik Garrison, Zev N. Kronenberg, Eric T. Dawson, Brent S. Pedersen, Pjotr Prins
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. PLoS Comput. Biol. 18 (5) (2022)
Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison
ODGI: understanding pangenome graphs. Bioinform. 38 (13) (2022)
Njagi Moses Mwaniki, Erik Garrison, Nadia Pisanti
Fast Exact String to D-Texts Alignments. CoRR (2022)
Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison
Efficient dynamic variation graphs. Bioinform. 36 (21) (2021)
Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs. PLoS Comput. Biol. 17 (9) (2021)
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
Haplotype-aware graph indexes. Bioinform. 36 (2) (2020)
Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen J. Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin
Viral coinfection analysis using a MinHash toolkit. BMC Bioinform. 20 (1) (2019)
Vincenzo Carletti, Pasquale Foggia, Erik Garrison, Luca Greco, Pierluigi Ritrovato, Mario Vento
Graph-Based Representations for Supporting Genome Data Analysis and Visualization: Opportunities and Challenges. GbRPR (2019)
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
Haplotype-aware graph indexes. WABI (2018)
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
Haplotype-aware graph indexes. CoRR (2018)
Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey
Superbubbles, Ultrabubbles, and Cacti. J. Comput. Biol. 25 (7) (2018)
Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall
A graph-based approach to diploid genome assembly. Bioinform. 34 (13) (2018)
Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey
Superbubbles, Ultrabubbles and Cacti. RECOMB (2017)
Adam M. Novak, Erik Garrison, Benedict Paten
A graph extension of the positional Burrows-Wheeler transform and its applications. Algorithms Mol. Biol. 12 (1) (2017)
Adam M. Novak, Erik Garrison, Benedict Paten
A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications. WABI (2016)