Glenn Hickey

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 5

Top Topics

Genomic Sequences

Top Venues

J. Comput. Biol.

Publications

Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison
Efficient dynamic variation graphs. Bioinform. 36 (21) (2021)
Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino
Sequence tube maps: making graph genomes intuitive to commuters. Bioinform. 35 (24) (2019)
Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey
Superbubbles, Ultrabubbles, and Cacti. J. Comput. Biol. 25 (7) (2018)
Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey
Superbubbles, Ultrabubbles and Cacti. RECOMB (2017)
Daniel R. Zerbino, Tracy Ballinger, Benedict Paten, Glenn Hickey, David Haussler
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. BMC Bioinform. 17 (2016)
Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten
Building a Pan-Genome Reference for a Population. J. Comput. Biol. 22 (5) (2015)
Kate R. Rosenbloom, Joel Armstrong, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Glenn Hickey, Angie S. Hinrichs, Robert Hubley, Donna Karolchik, Katrina Learned, Brian T. Lee, Chin H. Li, Karen H. Miga, Ngan Nguyen, Benedict Paten, Brian J. Raney, Arian F. A. Smit, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ngan Nguyen, Glenn Hickey, Brian J. Raney, Joel Armstrong, Hiram Clawson, Ann S. Zweig, Donna Karolchik, William James Kent, David Haussler, Benedict Paten
Comparative assembly hubs: Web-accessible browsers for comparative genomics. Bioinform. 30 (23) (2014)
Benedict Paten, Daniel R. Zerbino, Glenn Hickey, David Haussler
A unifying model of genome evolution under parsimony. BMC Bioinform. 15 (2014)
Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten
Building a Pangenome Reference for a Population. RECOMB (2014)
Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler
HAL: a hierarchical format for storing and analyzing multiple genome alignments. Bioinform. 29 (10) (2013)
Glenn Hickey, Mathieu Blanchette
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. RECOMB (2011)
Glenn Hickey, Mathieu Blanchette
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. J. Comput. Biol. 18 (11) (2011)
Glenn Hickey, Mathieu Blanchette, Paz Carmi, Anil Maheshwari, Norbert Zeh
An Approximation Algorithm for the Noah's Ark Problem with Random Feature Loss. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Glenn Hickey, Mathieu Blanchette
A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error. Pacific Symposium on Biocomputing (2010)
Frank K. H. A. Dehne, Glenn Hickey, Andrew Rau-Chaplin, Mark Byrne
Parallel catastrophe modelling on a Cell/BE. Int. J. Parallel Emergent Distributed Syst. 25 (5) (2010)
Frank K. H. A. Dehne, Glenn Hickey, Andrew Rau-Chaplin, Mark Byrne
Parallel catastrophe modelling on a cell processor. CASCON (2009)
Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem CoRR (2008)
Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem. WABI (2008)
Christian Blouin, Davin Butt, Glenn Hickey, Andrew Rau-Chaplin
Fast Parallel Maximum Likelihood-Based Protein Phylogeny. PDCS (2005)