Adam M. Novak

ORCID

Publication Activity (10 Years)

Years Active: 2015-2021
Publications (10 Years): 13

Top Venues

University of California, Santa Cruz, USA (PHD)

Education History

University of California, Santa Cruz, USA

PHD

Publications

Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison
Efficient dynamic variation graphs. Bioinform. 36 (21) (2021)
Xian Chang, Jordan Eizenga, Adam M. Novak, Jouni Sirén, Benedict Paten
Distance indexing and seed clustering in sequence graphs. Bioinform. 36 (Supplement-1) (2020)
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
Haplotype-aware graph indexes. Bioinform. 36 (2) (2020)
Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino
Sequence tube maps: making graph genomes intuitive to commuters. Bioinform. 35 (24) (2019)
David Haussler, Maciej Smuga-Otto, Jordan M. Eizenga, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov
A Flow Procedure for Linearization of Genome Sequence Graphs. J. Comput. Biol. 25 (7) (2018)
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
Haplotype-aware graph indexes. WABI (2018)
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
Haplotype-aware graph indexes. CoRR (2018)
Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey
Superbubbles, Ultrabubbles, and Cacti. J. Comput. Biol. 25 (7) (2018)
Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall
A graph-based approach to diploid genome assembly. Bioinform. 34 (13) (2018)
Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey
Superbubbles, Ultrabubbles and Cacti. RECOMB (2017)
David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov
A Flow Procedure for the Linearization of Genome Sequence Graphs. RECOMB (2017)
Adam M. Novak, Erik Garrison, Benedict Paten
A graph extension of the positional Burrows-Wheeler transform and its applications. Algorithms Mol. Biol. 12 (1) (2017)
Adam M. Novak, Erik Garrison, Benedict Paten
A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications. WABI (2016)
Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler
The NIH BD2K center for big data in translational genomics. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Adam M. Novak, Yohei Rosen, David Haussler, Benedict Paten
Canonical, stable, general mapping using context schemes. Bioinform. 31 (22) (2015)

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Publication Activity (10 Years)

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Adam M. Novak