Adam M. Phillippy

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 9

Top Topics

Interactive Visualization

Sampling Strategies

Escherichia Coli

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

Publications

Bryce Kille, Erik Garrison, Todd J. Treangen, Adam M. Phillippy
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation. Bioinform. 39 (9) (2023)
Mitchell R. Vollger, Peter Kerpedjiev, Adam M. Phillippy, Evan E. Eichler
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps. Bioinform. 38 (7) (2022)
Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy
Weighted minimizer sampling improves long read mapping. Bioinform. 36 (Supplement-1) (2020)
Alexander T. Dilthey, Alexander J. Mentzer, Raphael Carapito, Clare Cutland, Nezih Cereb, Shabir A Madhi, Arang Rhie, Sergey Koren, Seiamak Bahram, Gil McVean, Adam M. Phillippy
HLA*LA - HLA typing from linearly projected graph alignments. Bioinform. 35 (21) (2019)
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
Integrating Hi-C links with assembly graphs for chromosome-scale assembly. PLoS Comput. Biol. 15 (8) (2019)
Guillaume Marçais, Arthur L. Delcher, Adam M. Phillippy, Rachel Coston, Steven L. Salzberg, Aleksey V. Zimin
MUMmer4: A fast and versatile genome alignment system. PLoS Comput. Biol. 14 (1) (2018)
Chirag Jain, Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, Srinivas Aluru
A fast adaptive algorithm for computing whole-genome homology maps. Bioinform. 34 (17) (2018)
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. J. Comput. Biol. 25 (7) (2018)
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. RECOMB (2017)
Sergey Koren, Todd J. Treangen, Christopher Michael Hill, Mihai Pop, Adam M. Phillippy
Automated ensemble assembly and validation of microbial genomes. BMC Bioinform. 15 (2014)
Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings Bioinform. 14 (2) (2013)
Brian D. Ondov, Nicholas H. Bergman, Adam M. Phillippy
Interactive metagenomic visualization in a Web browser. BMC Bioinform. 12 (2011)
Adam M. Phillippy, Kunmi Ayanbule, Nathan J. Edwards, Steven L. Salzberg
Insignia: a DNA signature search web server for diagnostic assay development. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Adam M. Phillippy, Xiangyu Deng, Wei Zhang, Steven L. Salzberg
Efficient oligonucleotide probe selection for pan-genomic tiling arrays. BMC Bioinform. 10 (2009)
Adam M. Phillippy, Jacquline A. Mason, Kunmi Ayanbule, Daniel D. Sommer, Elisa Taviani, Anwar Huq, Rita R. Colwell, Ivor T. Knight, Steven L. Salzberg
Comprehensive DNA Signature Discovery and Validation. PLoS Comput. Biol. 3 (5) (2007)
Mihai Pop, Adam M. Phillippy, Arthur L. Delcher, Steven Salzberg
Comparative genome assembly. Briefings Bioinform. 5 (3) (2004)