Evan E. Eichler

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 5

Top Topics

Interactive Visualization

Single Nucleotide Polymorphisms

Top Venues

Nucleic Acids Res.

Publications

Philip C. Dishuck, Allison N. Rozanski, Glennis Logsdon, David Porubsky, Evan E. Eichler
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. Bioinform. 39 (1) (2023)
Mitchell R. Vollger, Peter Kerpedjiev, Adam M. Phillippy, Evan E. Eichler
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps. Bioinform. 38 (7) (2022)
Maryam Ghareghani, David Porubsky, Ashley D. Sanders, Sascha Meiers, Evan E. Eichler, Jan O. Korbel, Tobias Marschall
Strand-seq enables reliable separation of long reads by chromosome via expectation maximization. Bioinform. 34 (13) (2018)
Mark Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler
Resolving Multicopy Duplications de novo Using Polyploid Phasing. RECOMB (2017)
Tychele Turner, Qian Yi, Niklas Krumm, John Huddleston, Kendra Hoekzema, Holly A. Stessman, Anna-Lisa Doebley, Raphael A. Bernier, Deborah A. Nickerson, Evan E. Eichler
denovo-db: a compendium of human de novo variants. Nucleic Acids Res. 45 (Database-Issue) (2017)
Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms. Bioinform. 30 (5) (2014)
Faraz Hach, Iman Sarrafi, Farhad Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler
coding mutations to autism spectrum disorder. Nat. 515 (7526) (2014)
Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan
Sensitive and fast mapping of di-base encoded reads. Bioinform. 28 (1) (2012)
Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes. RECOMB (2011)
Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan
Sensitive and fast mapping of di-base encoded reads. Bioinform. 27 (14) (2011)
Can Alkan, Michael Brudno, Evan E. Eichler, Maricel G. Kann, Süleyman Cenk Sahinalp
Session Introduction. Pacific Symposium on Biocomputing (2010)
Troy Zerr, Gregory M. Cooper, Evan E. Eichler, Deborah A. Nickerson
Targeted interrogation of copy number variation using SCIMMkit. Bioinform. 26 (1) (2010)
Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinform. 26 (10) (2010)
Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinform. 26 (12) (2010)
Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes. RECOMB (2009)
Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Süleyman Cenk Sahinalp, Evan E. Eichler
Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data. PLoS Comput. Biol. 3 (9) (2007)
Can Alkan, Eray Tüzün, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp
Manipulating multiple sequence alignments via MaM and WebMaM. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Can Alkan, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp, Eray Tüzün
The Role of Unequal Crossover in Alpha-Satellite DNA Evolution: A Computational Analysis. J. Comput. Biol. 11 (5) (2004)
Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün
Identifying Uniformly Mutated Segments within Repeats. J. Bioinform. Comput. Biol. 2 (4) (2004)
Evan E. Eichler
Recent duplication, evolution and assembly of the human genome. RECOMB (2002)
Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün
Statistical Identification of Uniformly Mutated Segments within Repeats. CPM (2002)