Ibrahim Numanagic

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 10

Top Topics

Rapid Development

Escherichia Coli

Top Venues

Proc. ACM Program. Lang.

Publications

Ariya Shajii, Gabriel Ramirez, Haris Smajlovic, Jessica Ray, Bonnie Berger, Saman P. Amarasinghe, Ibrahim Numanagic
Codon: A Compiler for High-Performance Pythonic Applications and DSLs. CC (2023)
Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic
Fast characterization of segmental duplication structure in multiple genome assemblies. Algorithms Mol. Biol. 17 (1) (2022)
Haris Smajlovic, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagic
Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines. IPDPS Workshops (2022)
Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic
BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies. WABI (2021)
Ariya Shajii, Ibrahim Numanagic, Riyadh Baghdadi, Bonnie Berger, Saman P. Amarasinghe
Seq: a high-performance language for bioinformatics. Proc. ACM Program. Lang. 3 (OOPSLA) (2019)
Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp
Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinform. 34 (10) (2018)
Ariya Shajii, Ibrahim Numanagic, Bonnie Berger
Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream Analyses. RECOMB (2018)
Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach
Fast Characterization of Segmental Duplications in Genome Assemblies. CoRR (2018)
Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach
Fast characterization of segmental duplications in genome assemblies. Bioinform. 34 (17) (2018)
Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach
Discovery and genotyping of novel sequence insertions in many sequenced individuals. Bioinform. 33 (14) (2017)
Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp
using high-throughput sequencing data. Bioinform. 31 (12) (2015)
Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms. Bioinform. 30 (5) (2014)
Faraz Hach, Ibrahim Numanagic, Can Alkan, Süleyman Cenk Sahinalp
SCALCE: boosting sequence compression algorithms using locally consistent encoding. Bioinform. 28 (23) (2012)