Haixu Tang

ORCID

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 56

Top Venues

CoRR

Bioinform.

USENIX Security Symposium

J. Comput. Biol.

Publications

Dandan Xu, Di Tang, Yi Chen, XiaoFeng Wang, Kai Chen, Haixu Tang, Longxing Li
Racing on the Negative Force: Efficient Vulnerability Root-Cause Analysis through Reinforcement Learning on Counterexamples. USENIX Security Symposium (2024)
Benjamin Giovanni Iovino, Haixu Tang, Yuzhen Ye
Protein Domain Embeddings for Fast and Accurate Similarity Search. RECOMB (2024)
Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, John Mitchell, Haixu Tang, Xiaofeng Wang
DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training. CoRR (2024)
Zhixin Li, Rui Zhu, Zihao Wang, Jiale Li, Kaiyuan Liu, Yue Qin, Yongming Fan, Mingyu Gu, Zhihui Lu, Jie Wu, Hongfeng Chai, Xiaofeng Wang, Haixu Tang
FairFix: Enhancing Fairness of Pre-Trained Deep Neural Networks with Scarce Data Resources. IDS (2024)
Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, John Mitchell, Haixu Tang, XiaoFeng Wang
DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training. USENIX Security Symposium (2024)
Rui Zhu, Di Tang, Siyuan Tang, Xiaofeng Wang, Haixu Tang
Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models. SP (2023)
Rui Zhu, Di Tang, Siyuan Tang, Guanhong Tao, Shiqing Ma, XiaoFeng Wang, Haixu Tang
Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering. CoRR (2023)
Xiaotian Zhou, Qian Wang, Xiaofeng Wang, Haixu Tang, Xiaozhong Liu
Large Language Model Soft Ideologization via AI-Self-Consciousness. CoRR (2023)
Xiaoyi Chen, Siyuan Tang, Rui Zhu, Shijun Yan, Lei Jin, Zihao Wang, Liya Su, XiaoFeng Wang, Haixu Tang
The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks. CoRR (2023)
Yi Chen, Di Tang, Yepeng Yao, Mingming Zha, XiaoFeng Wang, Xiaozhong Liu, Haixu Tang, Baoxu Liu
Sherlock on Specs: Building LTE Conformance Tests through Automated Reasoning. USENIX Security Symposium (2023)
Haixu Tang
Preface: RECOMB 2023 Special Issue. J. Comput. Biol. 30 (11) (2023)
Xurui Li, Yue Qin, Rui Zhu, Tianqianjin Lin, Yongming Fan, Yangyang Kang, Kaisong Song, Fubang Zhao, Changlong Sun, Haixu Tang, Xiaozhong Liu
STINMatch: Semi-Supervised Semantic-Topological Iteration Network for Financial Risk Detection via News Label Diffusion. EMNLP (2023)
Rui Zhu, Di Tang, Siyuan Tang, XiaoFeng Wang, Haixu Tang
Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models. CoRR (2022)
Di Tang, Rui Zhu, XiaoFeng Wang, Haixu Tang, Yi Chen
Understanding Impacts of Task Similarity on Backdoor Attack and Detection. CoRR (2022)
Yi Chen, Di Tang, Yepeng Yao, Mingming Zha, XiaoFeng Wang, Xiaozhong Liu, Haixu Tang, Dongfang Zhao
Seeing the Forest for the Trees: Understanding Security Hazards in the 3GPP Ecosystem through Intelligent Analysis on Change Requests. USENIX Security Symposium (2022)
Wontack Han, Haixu Tang, Yuzhen Ye
Locality-Sensitive Hashing-Based k-Mer Clustering for Identification of Differential Microbial Markers Related to Host Phenotype. J. Comput. Biol. 29 (7) (2022)
Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Arif Ozgun Harmanci, Miran Kim, Kai W. Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado
The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition. J. Am. Medical Informatics Assoc. 29 (12) (2022)
Yi Chen, Yepeng Yao, XiaoFeng Wang, Dandan Xu, Chang Yue, Xiaozhong Liu, Kai Chen, Haixu Tang, Baoxu Liu
Bookworm Game: Automatic Discovery of LTE Vulnerabilities Through Documentation Analysis. IEEE Symposium on Security and Privacy (2021)
Chathura Widanage, Weijie Liu, Jiayu Li, Hongbo Chen, XiaoFeng Wang, Haixu Tang, Judy Fox
HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. CoRR (2021)
Di Tang, XiaoFeng Wang, Haixu Tang, Kehuan Zhang
Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection. USENIX Security Symposium (2021)
Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang
Towards Fair Cross-Domain Adaptation via Generative Learning. WACV (2021)
Weijie Liu, Wenhao Wang, Hongbo Chen, Xiaofeng Wang, Yaosong Lu, Kai Chen, Xinyu Wang, Qintao Shen, Yi Chen, Haixu Tang
Practical and Efficient in-Enclave Verification of Privacy Compliance. DSN (2021)
Chathura Widanage, Weijie Liu, Jiayu Li, Hongbo Chen, XiaoFeng Wang, Haixu Tang, Judy Fox
HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. CLOUD (2021)
Weijie Liu, Hongbo Chen, XiaoFeng Wang, Zhi Li, Danfeng Zhang, Wenhao Wang, Haixu Tang
Understanding TEE Containers, Easy to Use? Hard to Trust. CoRR (2021)
Diyue Bu, XiaoFeng Wang, Haixu Tang
Haplotype-based membership inference from summary genomic data. Bioinform. 37 (Supplement) (2021)
Rui Zhu, Chao Jiang, Xiaofeng Wang, Shuang Wang, Hao Zheng, Haixu Tang
Privacy-preserving construction of generalized linear mixed model for biomedical computation. Bioinform. 36 (Supplement-1) (2020)
Yuan Xie, Yulong Pei, Yun Lu, Haixu Tang, Yuan Zhou
Learning Structural Genetic Information via Graph Neural Embedding. ISBRA (2020)
Yan Song, Haixu Tang, Haoyu Zhang, Qin Zhang
Overlap detection on long, error-prone sequencing reads via smooth q-gram. Bioinform. 36 (19) (2020)
Gamze Gürsoy, Megan Doerr, John Wilbanks, Jennifer K. Wagner, Haixu Tang, Steven E. Brenner
Navigating Ethical Quandaries with the Privacy Dilemma of Biomedical Datasets. PSB (2020)
Yunhui Long, Lei Wang, Diyue Bu, Vincent Bindschaedler, XiaoFeng Wang, Haixu Tang, Carl A. Gunter, Kai Chen
A Pragmatic Approach to Membership Inferences on Machine Learning Models. EuroS&P (2020)
Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang
Towards Fair Cross-Domain Adaptation via Generative Learning. CoRR (2020)
Weijie Liu, Wenhao Wang, XiaoFeng Wang, Xiaozhu Meng, Yaosong Lu, Hongbo Chen, Xinyu Wang, Qingtao Shen, Kai Chen, Haixu Tang, Yi Chen, Luyi Xing
Confidential Attestation: Efficient in-Enclave Verification of Privacy Policy Compliance. CoRR (2020)
Rui Zhu, Bo Lin, Haixu Tang
Bounding The Number of Linear Regions in Local Area for Neural Networks with ReLU Activations. CoRR (2020)
Wazim Mohammed Ismail, Etienne Nzabarushimana, Haixu Tang
Algorithmic approaches to clonal reconstruction in heterogeneous cell populations. Quant. Biol. 7 (4) (2019)
Gamze Gürsoy, Arif O. Harmanci, Haixu Tang, Erman Ayday, Steven E. Brenner
Session Introduction. PSB (2019)
Inken Hagestedt, Yang Zhang, Mathias Humbert, Pascal Berrang, Haixu Tang, XiaoFeng Wang, Michael Backes
MBeacon: Privacy-Preserving Beacons for DNA Methylation Data. NDSS (2019)
Wenhao Wang, Yichen Jiang, Qintao Shen, Weihao Huang, Hao Chen, Shuang Wang, Xiaofeng Wang, Haixu Tang, Kai Chen, Kristin E. Lauter, Dongdai Lin
Toward Scalable Fully Homomorphic Encryption Through Light Trusted Computing Assistance. CoRR (2019)
Erman Ayday, Muhammad Naveed, Haixu Tang
GenoPri'17: International Workshop on Genome Privacy and Security. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Di Tang, Xiaofeng Wang, Haixu Tang, Kehuan Zhang
Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection. CoRR (2019)
Yunhui Long, Vincent Bindschaedler, Lei Wang, Diyue Bu, Xiaofeng Wang, Haixu Tang, Carl A. Gunter, Kai Chen
Understanding Membership Inferences on Well-Generalized Learning Models. CoRR (2018)
Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp
Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinform. 34 (10) (2018)
Sujun Li, Alex DeCourcy, Haixu Tang
Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry. RECOMB (2018)
Haoyu Zhang, Qin Zhang, Haixu Tang
Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads. CoRR (2018)
Yongan Zhao, Xiaofeng Wang, Haixu Tang
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. J. Comput. Biol. 25 (6) (2018)
Haoyu Zhang, Qin Zhang, Haixu Tang
Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads. CIKM (2018)
Xuefu Wang, Sujun Li, Wenjing Peng, Yehia Mechref, Haixu Tang
A Sparse Latent Regression Approach for Integrative Analysis of Glycomic and Glycotranscriptomic Data. BCB (2017)
Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, XiaoFeng Wang, Jean-Pierre Hubaux
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. 24 (4) (2017)
Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, XiaoFeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A. Gunter
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. CCS (2017)
Haixu Tang, Etienne Nzabarushimana
STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data. BMC Bioinform. 18 (S-11) (2017)
Zhiqun Xie, Haixu Tang
ISEScan: automated identification of insertion sequence elements in prokaryotic genomes. Bioinform. 33 (21) (2017)
Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, XiaoFeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A. Gunter
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. CoRR (2017)
Hussein Mohsen, Haixu Tang, Yuzhen Ye
Improving de novo metatranscriptome assembly via machine learning algorithms. Int. J. Comput. Biol. Drug Des. 10 (2) (2017)
Haixu Tang, Sujun Li, Yuzhen Ye
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics. PLoS Comput. Biol. 12 (12) (2016)
Sujun Li, Nuno Bandeira, XiaoFeng Wang, Haixu Tang
On the Privacy Risks of Sharing Clinical Proteomics Data. CRI (2016)
Hyungro Lee, Min Su Lee, Wazim Mohammed Ismail, Mina Rho, Geoffrey C. Fox, Sangyoon Oh, Haixu Tang
MGEScan: a Galaxy-based system for identifying retrotransposons in genomes. Bioinform. 32 (16) (2016)
Yuzhen Ye, Haixu Tang
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. Bioinform. 32 (7) (2016)
Xiao Shaun Wang, Yan Huang, Yongan Zhao, Haixu Tang, XiaoFeng Wang, Diyue Bu
Efficient Genome-Wide, Privacy-Preserving Similar Patient Query based on Private Edit Distance. CCS (2015)
Chao Ji, Yong Fuga Li, Earl P. Bellinger, Sujun Li, Randy J. Arnold, Predrag Radivojac, Haixu Tang
A maximum-likelihood approach to absolute protein quantification in mass spectrometry. BCB (2015)
Yuzhen Ye, Haixu Tang
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. CoRR (2015)
Yongan Zhao, XiaoFeng Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang
Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. J. Am. Medical Informatics Assoc. 22 (1) (2015)
Mingjie Wang, Haixu Tang, Yuzhen Ye
Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment. BIBM (2014)
Heewook Lee, Ellen Popodi, Patricia L. Foster, Haixu Tang
Detection of Structural Variants Involving Repetitive Regions in the Reference Genome. J. Comput. Biol. 21 (3) (2014)
Wazim Ismail, Yuzhen Ye, Haixu Tang
Gene finding in metatranscriptomic sequences. BMC Bioinform. 15 (S-9) (2014)
Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schutte, James D. Bever, Haixu Tang, Geoffrey C. Fox
Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions. CCGRID (2014)
Diyue Bu, Haixu Tang
Quasispecies reconstruction based on vertex coloring algorithms. BIBM (2014)
Xiaoqian Jiang, Yongan Zhao, Xiaofeng Fang, Bradley A. Malin, Shuang Wang, Lucila Ohno-Machado, Haixu Tang
A community assessment of privacy preserving techniques for human genomes. BMC Medical Informatics Decis. Mak. 14 (S-1) (2014)
Chuan-Yih Yu, Anoop M. Mayampurath, Yunli Hu, Shiyue Zhou, Yehia Mechref, Haixu Tang
Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry. Bioinform. 29 (13) (2013)
Sujun Li, Randy J. Arnold, Haixu Tang, Predrag Radivojac
Improving phosphopeptide identification in shotgun proteomics by supervised filtering of peptide-spectrum matches. BCB (2013)
Dazhi Jiao, Yuzhen Ye, Haixu Tang
Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences. PLoS Comput. Biol. 9 (3) (2013)
Yangyi Chen, Bo Peng, XiaoFeng Wang, Haixu Tang
Large-Scale Privacy-Preserving Mapping of Human Genomic Sequences on Hybrid Clouds. NDSS (2012)
XiaoFeng Wang, Haixu Tang
Privacy Protection in Sharing Personal Genome Sequencing Data. HISB (2012)
Yongan Zhao, Haixu Tang, Yuzhen Ye
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinform. 28 (1) (2012)
Mingjie Wang, Yuzhen Ye, Haixu Tang
Graph Approach to the Quantification of Closely-Related Genomes in a Microbial Community. J. Comput. Biol. 19 (6) (2012)
Heewook Lee, Ellen Popodi, Patricia L. Foster, Haixu Tang
Detecting structural variants involving repetitive elements: capturing transposition events of IS elements in the genome of Escherichia coli. BMC Bioinform. 13 (S-18) (2012)
Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences. BCB (2012)
Seungmook Lee, Min-Seok Kwon, Hyoung-Joo Lee, Young-Ki Paik, Haixu Tang, Jae K. Lee, Taesung Park
Enhanced peptide quantification using spectral count clustering and cluster abundance. BMC Bioinform. 12 (2011)
Neethu Shah, Haixu Tang, Thomas G. Doak, Yuzhen Ye
Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics. Pacific Symposium on Biocomputing (2011)
Xiao-yong Zhou, Bo Peng, Yong Fuga Li, Yangyi Chen, Haixu Tang, XiaoFeng Wang
To Release or Not to Release: Evaluating Information Leaks in Aggregate Human-Genome Data. ESORICS (2011)
Yuzhen Ye, Jeong-Hyeon Choi, Haixu Tang
RAPSearch: a Fast Protein Similarity Search Tool for Short Reads. BMC Bioinform. 12 (2011)
Geoffrey C. Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Jaliya Ekanayake, Thilina Gunarathne, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert Liu
Biomedical Case Studies in Data Intensive Computing. CloudCom (2009)
Yuzhen Ye, Haixu Tang
An Orfome Assembly Approach to Metagenomics Sequences Analysis. J. Bioinform. Comput. Biol. 7 (3) (2009)
Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. J. Comput. Biol. 16 (8) (2009)
Rui Wang, XiaoFeng Wang, Zhou Li, Haixu Tang, Michael K. Reiter, Zheng Dong
Privacy-preserving genomic computation through program specialization. CCS (2009)
Rui Wang, Yong Fuga Li, XiaoFeng Wang, Haixu Tang, Xiao-yong Zhou
Learning your identity and disease from research papers: information leaks in genome wide association study. CCS (2009)
Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinform. 24 (1) (2008)
Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne
A machine-learning approach to combined evidence validation of genome assemblies. Bioinform. 24 (6) (2008)
Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB (2008)
Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Pedro Alves, Randy J. Arnold, Milos V. Novotny, Predrag Radivojac, James P. Reilly, Haixu Tang
Advancement in Protein Inference from Shotgun Proteomics Using Peptide Detectability. Pacific Symposium on Biocomputing (2007)
Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim
dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis. Bioinform. 23 (19) (2007)
Vineet Bafna, Haixu Tang, Shaojie Zhang
Consensus Folding of Unaligned RNA Sequences Revisited. J. Comput. Biol. 13 (2) (2006)
Randy J. Arnold, Narmada Jayasankar, Divya Aggarwal, Haixu Tang, Predrag Radivojac
A Machine Learning Approach to Predicting Peptide Fragmentation Spectra. Pacific Symposium on Biocomputing (2006)
Yin Wu, Yehia Mechref, Iveta Klouckova, Milos V. Novotny, Haixu Tang
A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry. Systems Biology and Computational Proteomics (2006)
Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic
An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences. VDMB (2006)
Haixu Tang, Randy J. Arnold, Pedro Alves, Zhiyin Xun, David E. Clemmer, Milos V. Novotny, James P. Reilly, Predrag Radivojac
A computational approach toward label-free protein quantification using predicted peptide detectability. ISMB (Supplement of Bioinformatics) (2006)
Haixu Tang, Yehia Mechref, Milos V. Novotny
Automated interpretation of MS/MS spectra of oligosaccharides. ISMB (Supplement of Bioinformatics) (2005)
Vineet Bafna, Haixu Tang, Shaojie Zhang
Consensus Folding of Unaligned RNA Sequences Revisited. RECOMB (2005)
Pavel A. Pevzner, Haixu Tang, Glenn Tesler
repeat classification and fragment assembly. RECOMB (2004)
Qiang Tu, Haixu Tang, Dafu Ding
MedBlast: searching articles related to a biological sequence. Bioinform. 20 (1) (2004)
Mark Chaisson, Pavel A. Pevzner, Haixu Tang
Fragment assembly with short reads. Bioinform. 20 (13) (2004)

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Publication Activity (10 Years)

Top Topics

Top Venues

Haixu Tang