Carlos D. Bustamante

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 13

Top Topics

Class Conditional

Top Venues

Pacific Symposium on Biocomputing

Publications

Albert Dominguez Mantes, Daniel Mas Montserrat, Carlos D. Bustamante, Xavier Giró-i-Nieto, Alexander G. Ioannidis
Neural ADMIXTURE for rapid genomic clustering. Nat. Comput. Sci. 3 (7) (2023)
Julia Gimbernat-Mayol, Albert Dominguez Mantes, Carlos D. Bustamante, Daniel Mas Montserrat, Alexander G. Ioannidis
Archetypal Analysis for population genetics. PLoS Comput. Biol. 18 (8) (2022)
Arturo López Pineda, Armin Pourshafeie, Alexander Ioannidis, Collin McCloskey Leibold, Avis L. Chan, Carlos D. Bustamante, Jennifer Frankovich, Genevieve L. Wojcik
Discovering prescription patterns in pediatric acute-onset neuropsychiatric syndrome patients. J. Biomed. Informatics 113 (2021)
Daniel Mas Montserrat, Carlos D. Bustamante, Alexander Ioannidis
Lai-Net: Local-Ancestry Inference with Neural Networks. ICASSP (2020)
Allen Nie, Arturo L. Pineda, Matt W. Wright, Hannah Wand, Bryan Wulf, Helio A. Costa, Ronak Y. Patel, Carlos D. Bustamante, James Zou
LitGen: Genetic Literature Recommendation Guided by Human Explanations. PSB (2020)
Allen Nie, Arturo L. Pineda, Matt W. Wright, Hannah Wand, Bryan Wulf, Helio A. Costa, Ronak Y. Patel, Carlos D. Bustamante, James Zou
LitGen: Genetic Literature Recommendation Guided by Human Explanations. CoRR (2019)
Daniel Mas Montserrat, Carlos D. Bustamante, Alexander Ioannidis
Class-Conditional VAE-GAN for Local-Ancestry Simulation. CoRR (2019)
Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D. Bustamante, Serafim Batzoglou, Jure Leskovec
Network Enhancement: a general method to denoise weighted biological networks. CoRR (2018)
Allen Nie, Ashley Zehnder, Rodney López Page, Yuhui Zhang, Arturo López Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou
DeepTag: inferring diagnoses from veterinary clinical notes. npj Digit. Medicine 1 (2018)
Allen Nie, Ashley Zehnder, Rodney López Page, Arturo L. Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou
DeepTag: inferring all-cause diagnoses from clinical notes in under-resourced medical domain. CoRR (2018)
Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, XiaoFeng Wang, Jean-Pierre Hubaux
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. 24 (4) (2017)
Nilah M. Ioannidis, Joe R. Davis, Marianne K. DeGorter, Nicholas B. Larson, Shannon K. McDonnell, Amy J. French, Alexis J. Battle, Trevor J. Hastie, Stephen N. Thibodeau, Stephen B. Montgomery, Carlos D. Bustamante, Weiva Sieh, Alice S. Whittemore
FIRE: functional inference of genetic variants that regulate gene expression. Bioinform. 33 (24) (2017)
Suyash S. Shringarpure, Carlos D. Bustamante, Kenneth Lange, David H. Alexander
Efficient analysis of large datasets and sex bias with ADMIXTURE. BMC Bioinform. 17 (2016)
Alicia R. Martin, Gerard Tse, Carlos D. Bustamante, Eimear E. Kenny
Imputation-based Assessment of Next Generation Rare Exome Variant Arrays. Pacific Symposium on Biocomputing (2014)
Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. Pacific Symposium on Biocomputing (2014)
Kirsten E. Eilertson, James G. Booth, Carlos D. Bustamante
SnIPRE: Selection Inference Using a Poisson Random Effects Model. PLoS Comput. Biol. 8 (12) (2012)
Mark H. Wright, Chih-Wei Tung, Keyan Zhao, Andy Reynolds, Susan McCouch, Carlos D. Bustamante
ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinform. 26 (23) (2010)
Veronica J. Santos, Carlos D. Bustamante, Francisco J. Valero Cuevas
Improving the Fitness of High-Dimensional Biomechanical Models via Data-Driven Stochastic Exploration. IEEE Trans. Biomed. Eng. 56 (3) (2009)
Matthew W. Dimmic, Shamil R. Sunyaev, Carlos D. Bustamante
Session Introduction: Inferring SNP Function Using Evolutionary, Structural and Computational Methods. Pacific Symposium on Biocomputing (2005)
Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen
Detecting coevolving amino acid sites using Bayesian mutational mapping. ISMB (Supplement of Bioinformatics) (2005)