Uri Keich

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 6

Top Topics

Fast Fourier Transform

Poisson Process

Pairwise Interactions

Top Venues

J. Comput. Biol.

ACM Trans. Math. Softw.

Publications

Jack Freestone, Lukas Käll, William Stafford Noble, Uri Keich
Semi-supervised Learning While Controlling the FDR with an Application to Tandem Mass Spectrometry Analysis. RECOMB (2024)
Noah Peres, Andrew Ray Lee, Uri Keich
Exactly Computing the Tail of the Poisson-Binomial Distribution. ACM Trans. Math. Softw. 47 (4) (2021)
Kristen Emery, Syamand Hasam, William Stafford Noble, Uri Keich
Multiple Competition-Based FDR Control and Its Application to Peptide Detection. RECOMB (2020)
Uri Keich, William Stafford Noble
Progressive Calibration and Averaging for Tandem Mass Spectrometry Statistical Confidence Estimation: Why Settle for a Single Decoy? RECOMB (2017)
David Manescu, Uri Keich
A Symmetric Length-Aware Enrichment Test. J. Comput. Biol. 23 (6) (2016)
Huon Wilson, Uri Keich
Accurate pairwise convolutions of non-negative vectors via FFT. Comput. Stat. Data Anal. 101 (2016)
David Manescu, Uri Keich
A Symmetric Length-Aware Enrichment Test. RECOMB (2015)
Emi Tanaka, Timothy L. Bailey, Uri Keich
Improving MEME via a two-tiered significance analysis. Bioinform. 30 (14) (2014)
Emi Tanaka, Timothy L. Bailey, Charles E. Grant, William Stafford Noble, Uri Keich
Improved similarity scores for comparing motifs. Bioinform. 27 (12) (2011)
Patrick Ng, Uri Keich
Alignment Constrained Sampling. J. Comput. Biol. 18 (2) (2011)
Niranjan Nagarajan, Uri Keich
Reliability and efficiency of algorithms for computing the significance of the Mann-Whitney test. Comput. Stat. 24 (4) (2009)
Niranjan Nagarajan, Uri Keich
FAST: Fourier transform based algorithms for significance testing of ungapped multiple alignments. Bioinform. 24 (4) (2008)
Uri Keich, Hong Gao, Jeffrey S. Garretson, Anand Bhaskar, Ivan Liachko, Justin Donato, Bik K. Tye
Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast. BMC Bioinform. 9 (2008)
Patrick Ng, Uri Keich
GIMSAN: a Gibbs motif finder with significance analysis. Bioinform. 24 (19) (2008)
Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Patrick Ng, Niranjan Nagarajan, Neil Jones, Uri Keich
Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. ISMB (Supplement of Bioinformatics) (2006)
Jeremy Buhler, Uri Keich, Yanni Sun
Designing seeds for similarity search in genomic DNA. J. Comput. Syst. Sci. 70 (3) (2005)
Niranjan Nagarajan, Neil Jones, Uri Keich
Computing the P-value of the information content from an alignment of multiple sequences. ISMB (Supplement of Bioinformatics) (2005)
Uri Keich
sFFT: A Faster Accurate Computation of the p-Value of the Entropy Score. J. Comput. Biol. 12 (4) (2005)
Uri Keich, Ming Li, Bin Ma, John Tromp
On spaced seeds for similarity search. Discret. Appl. Math. 138 (3) (2004)
Uri Keich, Niranjan Nagarajan
A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. WABI (2004)
Jeremy Buhler, Uri Keich, Yanni Sun
Designing seeds for similarity search in genomic DNA. RECOMB (2003)
Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner
Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing (2003)
Uri Keich, Pavel A. Pevzner
U Subtle motifs: defining the limits of motif finding algorithms. Bioinform. 18 (10) (2002)
Uri Keich, Pavel A. Pevzner
Finding motifs in the twilight zone. Bioinform. 18 (10) (2002)
Uri Keich, Pavel A. Pevzner
Finding motifs in the twilight zone. RECOMB (2002)
Ron Aharoni, Uri Keich
A generalization of the Ahlswede-Daykin inequality. Discret. Math. 152 (1-3) (1996)