Designing seeds for similarity search in genomic DNA.
Jeremy BuhlerUri KeichYanni SunPublished in: J. Comput. Syst. Sci. (2005)
Keyphrases
- similarity search
- metric space
- sequence databases
- high dimensional
- similarity searching
- distance function
- genomic sequences
- similarity measure
- query processing
- multimedia databases
- high throughput sequencing
- high dimensional data
- dna sequences
- indexing techniques
- similarity retrieval
- r tree
- triangle inequality
- knn
- similarity queries
- efficient similarity search
- high throughput
- indexing structure
- efficient indexing
- cross view
- locality sensitive hashing
- approximate similarity search
- machine learning
- image data
- dna copy number
- nearest neighbor search
- dynamic time warping