Niranjan Nagarajan

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 9

Top Topics

Comparative Analysis

Prostate Cancer

Top Venues

Nucleic Acids Res.

Publications

Josip Maric, Kresimir Krizanovic, Sylvain Riondet, Niranjan Nagarajan, Mile Sikic
Comparative analysis of metagenomic classifiers for long-read sequencing datasets. BMC Bioinform. 25 (1) (2024)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. BMC Bioinform. 25 (1) (2024)
Hatairat Yingtaweesittikul, Jiaxi Wu, Aanchal Mongia, Rafael Peres, Karrie Ko, Niranjan Nagarajan, Chayaporn Suphavilai
CREAMMIST: an integrative probabilistic database for cancer drug response prediction. Nucleic Acids Res. 51 (D1) (2023)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
TUGDA: task uncertainty guided domain adaptation for robust generalization of cancer drug response prediction from in vitro to in vivo settings. Bioinform. 37 (Supplement) (2021)
Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data. PLoS Comput. Biol. 17 (9) (2021)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
Task Uncertainty Loss Reduce Negative Transfer in Asymmetric Multi-task Feature Learning (Student Abstract). AAAI (2021)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
Task Uncertainty Loss Reduce Negative Transfer in Asymmetric Multi-task Feature Learning. CoRR (2020)
Chayaporn Suphavilai, Denis Bertrand, Niranjan Nagarajan
Predicting Cancer Drug Response using a Recommender System. Bioinform. 34 (22) (2018)
Kun Ming Kenneth Lim, Chenhao Li, Kern Rei Chng, Niranjan Nagarajan
@MInter: automated text-mining of microbial interactions. Bioinform. 32 (19) (2016)
Song Gao, Denis Bertrand, Niranjan Nagarajan
FinIS: Improved in silico Finishing Using an Exact Quadratic Programming Formulation. WABI (2012)
Song Gao, Niranjan Nagarajan, Wing-Kin Sung
Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. RECOMB (2011)
Song Gao, Wing-Kin Sung, Niranjan Nagarajan
Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. J. Comput. Biol. 18 (11) (2011)
Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. J. Comput. Biol. 17 (3) (2010)
James Robert White, Saket Navlakha, Niranjan Nagarajan, Mohammadreza Ghodsi, Carl Kingsford, Mihai Pop
Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC Bioinform. 11 (2010)
Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. RECOMB (2009)
James Robert White, Niranjan Nagarajan, Mihai Pop
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput. Biol. 5 (4) (2009)
Niranjan Nagarajan, Uri Keich
Reliability and efficiency of algorithms for computing the significance of the Mann-Whitney test. Comput. Stat. 24 (4) (2009)
Niranjan Nagarajan, Mihai Pop
Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. J. Comput. Biol. 16 (7) (2009)
Niranjan Nagarajan, Uri Keich
FAST: Fourier transform based algorithms for significance testing of ungapped multiple alignments. Bioinform. 24 (4) (2008)
Niranjan Nagarajan, Timothy D. Read, Mihai Pop
Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinform. 24 (10) (2008)
Niranjan Nagarajan, Carl Kingsford
Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques. BIBM (2008)
Patrick Ng, Niranjan Nagarajan, Neil Jones, Uri Keich
Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. ISMB (Supplement of Bioinformatics) (2006)
Niranjan Nagarajan, Neil Jones, Uri Keich
Computing the P-value of the information content from an alignment of multiple sequences. ISMB (Supplement of Bioinformatics) (2005)
Niranjan Nagarajan, Golan Yona
Automatic prediction of protein domains from sequence information using a hybrid learning system. Bioinform. 20 (9) (2004)
Uri Keich, Niranjan Nagarajan
A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. WABI (2004)
Niranjan Nagarajan, Golan Yona
A multi-expert system for the automatic detection of protein domains from sequence information. RECOMB (2003)