Steffen Heber

Publication Activity (10 Years)

Years Active: 2000-2022
Publications (10 Years): 12

Top Topics

Detection Algorithm

Arabidopsis Thaliana

Top Venues

GECCO (Companion)

J. Comput. Biol.

Publications

Elias Rotondo, Steffen Heber
A New Discrete Whale Optimization Algorithm with a Spiral 3-opt Local Search for Solving the Traveling Salesperson Problem. ISMSI (2022)
Charles E. Wimberley, Steffen Heber
PeakPass: Automating ChIP-Seq Blacklist Creation. J. Comput. Biol. 27 (2) (2020)
Patrick Perkins, Anna N. Stepanova, José M. Alonso, Steffen Heber
RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data. ICCABS (2019)
Patrick Perkins, Steffen Heber
Using a Novel Negative Selection Inspired Anomaly Detection Algorithm to Identify Corrupted Ribo-seq and RNA-seq Samples. BCB (2019)
Charles E. Wimberley, Steffen Heber
PeakPass: Automating ChIP-Seq Blacklist Creation. ISBRA (2019)
Patrick Perkins, Steffen Heber
Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection Algorithm. ICCABS (2018)
Bhupinder Sehra, Effat Farhana, Steffen Heber
Identifying the Signatures of Missing Transcripts. ICCABS (2018)
Samuel Ebert, Effat Farhana, Steffen Heber
A parallel island model for biogeography-based classification rule mining in julia. GECCO (Companion) (2018)
Effat Farhana, Steffen Heber
Biogeography-based rule mining for classification. GECCO (2017)
Patrick Perkins, Steffen Heber
riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data. ICCABS (2017)
Qiwen Hu, Catharina Merchante, Anna N. Stepanova, José M. Alonso, Steffen Heber
A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana. ISBRA (2015)
Qiwen Hu, Catharina Merchante, Anna N. Stepanova, José M. Alonso, Steffen Heber
Mining transcript features related to translation in Arabidopsis using LASSO and random forest. ICCABS (2015)
Karen Merchante, Qiwen Hu, Anna N. Stepanova, José M. Alonso, Steffen Heber
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants. ICCABS (2013)
Brian E. Howard, Paola Veronese, Steffen Heber
Improved RNA-Seq Partitions in Linear Models for Isoform Quantification. BIBM (2011)
Brian E. Howard, Xiaoping Tan, Paola Veronese, Steffen Heber
Workshop: Using a transcript catalog and paired-end RNA-Seq data to identify differential alternative splicing. ICCABS (2011)
Steffen Heber, Richard Mayr, Jens Stoye
Common Intervals of Multiple Permutations. Algorithmica 60 (2) (2011)
Brian E. Howard, Steffen Heber
Towards reliable isoform quantification using RNA-SEQ data. BMC Bioinform. 11 (S-3) (2010)
Brian E. Howard, Beate Sick, Steffen Heber
Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression. ISBRA (2009)
Brian E. Howard, Beate Sick, Steffen Heber
Unsupervised assessment of microarray data quality using a Gaussian mixture model. BMC Bioinform. 10 (2009)
Brian E. Howard, Steffen Heber
Towards Reliable Isoform Quantification Using RNA-Seq Data. BIBM (2009)
Sihui Zhao, Jihye Kim, Steffen Heber
Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates. ISBRA (2009)
Jihye Kim, Sihui Zhao, Brian E. Howard, Steffen Heber
Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing. ISBRA (2009)
Brian E. Howard, Beate Sick, Imara Perera, Yang Ju Im, Heike Winter-Sederoff, Steffen Heber
Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier. BIBE (2007)
Sihui Zhao, Jihye Kim, Steffen Heber
Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing. BIBE (2007)
Jihye Kim, Sihui Zhao, Steffen Heber
-regulatory elements involved in alternative splicing. ACM Southeast Regional Conference (2007)
Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Li Li, Steffen Heber, Qiang Zhang, Melvin E. Andersen
Statistical Approaches to Identifying Androgen Response Elements. ICDM Workshops (2007)
Steffen Heber, Beate Sick
Automatic quality assessment of Affymetrix GeneChip data. ACM Southeast Regional Conference (2006)
Steffen Heber, Carla D. Savage
Common intervals of trees. Inf. Process. Lett. 93 (2) (2005)
Michael Psarros, Steffen Heber, Manuela Sick, Gnanasekaran Thoppae, Keith Harshman, Beate Sick
: Remote Analysis Computation for gene Expression data. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Anne Bergeron, Steffen Heber, Jens Stoye
Common intervals and sorting by reversals: a marriage of necessity. ECCB (2002)
Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
Splicing graphs and EST assembly problem. ISMB (2002)
Steffen Heber, Jens Stoye
Algorithms for Finding Gene Clusters. WABI (2001)
Steffen Heber, Jens Stoye
Finding All Common Intervals of k Permutations. CPM (2001)
Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron
Contig Selection in Physical Mapping. J. Comput. Biol. 7 (3-4) (2000)
Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron
Contig selection in physical mapping. RECOMB (2000)