Max A. Alekseyev

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 29

Top Topics

Genome Rearrangements

Comparative Analysis

Top Venues

J. Comput. Biol.

Publications

Max A. Alekseyev
Enumeration of Payphone Permutations. Am. Math. Mon. 131 (6) (2024)
Max A. Alekseyev
On Computing Sets of Integers with Maximum Number of Pairs Summing to Powers of 2. IWOCA (2024)
Max A. Alekseyev
On computing sets of integers with maximum number of pairs summing to powers of 2. CoRR (2023)
Arda Aydin, Max A. Alekseyev, Alexander Barg
A family of permutationally invariant quantum codes. CoRR (2023)
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
Orienting Ordered Scaffolds: Complexity and Algorithms. SN Comput. Sci. 3 (4) (2022)
Max A. Alekseyev, José María Grau, Antonio M. Oller-Marcén
Computing solutions to the congruence 1n+2n+⋯+nn≡p(modn). Discret. Appl. Math. 286 (2020)
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
A unified ILP framework for core ancestral genome reconstruction problems. Bioinform. 36 (10) (2020)
Pavel Avdeyev, Max A. Alekseyev
Linearization of Ancestral Genomes with Duplicated Genes. BCB (2020)
Pavel Avdeyev, Maria Atamanova, Max A. Alekseyev
A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems. AlCoB (2019)
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
Orienting Ordered Scaffolds: Complexity and Algorithms. CoRR (2019)
Anton Nekhai, Maria Atamanova, Pavel Avdeyev, Max A. Alekseyev
A Rapid Exact Solution for the Guided Genome Halving Problem. BCB (2018)
Pavel Avdeyev, Shuai Jiang, Max A. Alekseyev
Implicit Transpositions in DCJ Scenarios. BCB (2018)
Nikita Alexeev, Max A. Alekseyev
Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters. J. Comput. Biol. 25 (11) (2018)
Max A. Alekseyev
On partitions into squares of distinct integers whose reciprocals sum to 1. CoRR (2018)
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ. RECOMB-CG (2017)
Sergey Aganezov Jr., Max A. Alekseyev
CAMSA: a tool for comparative analysis and merging of scaffold assemblies. BMC Bioinform. 18 (15) (2017)
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs. J. Comput. Biol. 24 (2) (2017)
Sergey Aganezov Jr., Max A. Alekseyev
On problem of orienting ordered scaffolds. ICCABS (2017)
Sergey Aganezov Jr., Max A. Alekseyev
Orientation of Ordered Scaffolds. RECOMB-CG (2017)
Yu-Chen Liu, Sheng-Da Hsu, Chih-Hung Chou, Wei-Yun Huang, Yu-Hung Chen, Chia-Yu Liu, Guan-Jay Lyu, Shao-Zhen Huang, Sergey Aganezov Jr., Max A. Alekseyev, Chung-Der Hsiao, Hsien-Da Huang
draft genome. BMC Genom. 17 (S-1) (2016)
Max A. Alekseyev
Computing the Inverses, their Power Sums, and Extrema for Euler's Totient and Other Multiplicative Functions. J. Integer Seq. 19 (5) (2016)
Nikita Alexeev, Max A. Alekseyev
Combinatorial Scoring of Phylogenetic Networks. COCOON (2016)
Nikita Alexeev, Pavel Avdeyev, Max A. Alekseyev
Comparative genomics meets topology: a novel view on genome median and halving problems. BMC Bioinform. 17 (S-14) (2016)
Pavel Avdeyev, Shuai Jiang, Sergey Aganezov Jr., Fei Hu, Max A. Alekseyev
Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss. J. Comput. Biol. 23 (3) (2016)
Sergey Aganezov Jr., Max A. Alekseyev
CAMSA: A tool for comparative analysis and merging of scaffold assemblies. ICCABS (2016)
Sergey Aganezov Jr., Max A. Alekseyev
Multi-genome Scaffold Co-assembly Based on the Analysis of Gene Orders and Genomic Repeats. ISBRA (2016)
Max A. Alekseyev, Gerard P. Michon
Making Walks Count: From Silent Circles to Hamiltonian Cycles. CoRR (2016)
Max A. Alekseyev
Weighted de Bruijn Graphs for the Menage Problem and Its Generalizations. IWOCA (2016)
Nikita Alexeev, Max A. Alekseyev
Combinatorial Scoring of Phylogenetic Networks. CoRR (2016)
Max A. Alekseyev, Marina G. Basova, Nikolai Yu. Zolotykh
On the Minimal Teaching Sets of Two-Dimensional Threshold Functions. SIAM J. Discret. Math. 29 (1) (2015)
Sergey Aganezov Jr., Nadia Sitdykova, Max A. Alekseyev
Scaffold assembly based on genome rearrangement analysis. Comput. Biol. Chem. 57 (2015)
Nikita Alexeev, Rustem Aidagulov, Max A. Alekseyev
A Computational Method for the Rate Estimation of Evolutionary Transpositions. IWBBIO (1) (2015)
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
Generalized Hultman Numbers and the Distribution of Multi-break Distances. AlCoB (2015)
Max A. Alekseyev
Weighted de Bruijn Graphs for the Menage Problem and Its Generalizations. CoRR (2015)
Shuai Jiang, Max A. Alekseyev
Implicit Transpositions in Shortest DCJ Scenarios. AlCoB (2015)
Nikita Alexeev, Max A. Alekseyev
Estimation of the true evolutionary distance under the fragile breakage model. ICCABS (2015)
Shuai Jiang, Max A. Alekseyev
Linearization of Median Genomes under DCJ. WABI (2014)
Max A. Alekseyev, Szabolcs Tengely
On Integral Points on Biquadratic Curves and Near-Multiples of Squares in Lucas Sequences. J. Integer Seq. 17 (6) (2014)
Max A. Alekseyev
Computing the (number of) inverses of Euler's totient and other multiplicative functions. CoRR (2014)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20 (10) (2013)
Max A. Alekseyev, Toby Berger
Solving the Tower of Hanoi with Random Moves CoRR (2013)
Max A. Alekseyev, Marina G. Basova, Nikolai Yu. Zolotykh
The average cardinality of the minimal teaching set of a threshold function on a two-dimensional rectangular grid. CoRR (2013)
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genom. 14 (S-1) (2013)
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. J. Comput. Biol. 20 (4) (2013)
Max A. Alekseyev
On integral points on biquadratic curves and near multiples of squares in Lucas sequences. CoRR (2013)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB (2013)
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. RECOMB (2012)
Sergey Aganezov Jr., Max A. Alekseyev
On pairwise distances and median score of three genomes under DCJ CoRR (2012)
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. 19 (5) (2012)
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
BayesHammer: Bayesian clustering for error correction in single-cell sequencing CoRR (2012)
Sergey Aganezov Jr., Max A. Alekseyev
On pairwise distances and median score of three genomes under DCJ. BMC Bioinform. 13 (S-19) (2012)
Max A. Alekseyev
On the Intersections of Fibonacci, Pell, and Lucas Numbers. Integers (2011)
Shuai Jiang, Max A. Alekseyev
Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions. RECOMB (2011)
Shuai Jiang, Max A. Alekseyev
Weighted genomic distance can hardly impose a bound on the proportion of transpositions CoRR (2010)
Max A. Alekseyev
On the Number of Two-Dimensional Threshold Functions. SIAM J. Discret. Math. 24 (4) (2010)
Max A. Alekseyev
On the intersections of Fibonacci, Pell, and Lucas numbers. CoRR (2010)
Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler
Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications. Commun. Inf. Syst. 10 (1) (2010)
Max A. Alekseyev, Pavel A. Pevzner
Limited Lifespan of Fragile Regions in Mammalian Evolution. RECOMB-CG (2010)
Max A. Alekseyev, John Henry Steelman
Counting Permutations with Two Displacement Values: 11281 [2007, 259]. Am. Math. Mon. 116 (5) (2009)
Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI (2009)
Max A. Alekseyev, Pavel A. Pevzner
Multi-break rearrangements and chromosomal evolution. Theor. Comput. Sci. 395 (2-3) (2008)
Max A. Alekseyev
Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes. J. Comput. Biol. 15 (8) (2008)
Max A. Alekseyev, Pavel A. Pevzner
Colored de Bruijn Graphs and the Genome Halving Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Max A. Alekseyev, Pavel A. Pevzner
Whole genome duplications, multi-break rearrangements, and genome halving problem. SODA (2007)
Max A. Alekseyev, Pavel A. Pevzner
Whole Genome Duplications and Contracted Breakpoint Graphs. SIAM J. Comput. 36 (6) (2007)
Max A. Alekseyev, Pavel A. Pevzner
Are There Rearrangement Hotspots in the Human Genome? PLoS Comput. Biol. 3 (11) (2007)
Max A. Alekseyev, Emeric Deutsch
Problem 11281. Am. Math. Mon. 114 (3) (2007)
Max A. Alekseyev
Multi-break Rearrangements: From Circular to Linear Genomes. RECOMB-CG (2007)
Max A. Alekseyev, Pavel A. Pevzner
Genome Halving Problem Revisited. FSTTCS (2004)
Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
Splicing graphs and EST assembly problem. ISMB (2002)