Son K. Pham

Publication Activity (10 Years)

Years Active: 2010-2017
Publications (10 Years): 2

Top Topics

Sequence Analysis

Subgraph Isomorphism

Shortest Path Problem

Graph Construction

Top Venues

J. Comput. Biol.

Publications

Ilya Minkin, Son K. Pham, Paul Medvedev
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes. Bioinform. 33 (24) (2017)
Ilya Minkin, Son K. Pham, Paul Medvedev
TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes. CoRR (2016)
Mikhail Kolmogorov, Brian J. Raney, Benedict Paten, Son K. Pham
Ragout - a reference-assisted assembly tool for bacterial genomes. Bioinform. 30 (12) (2014)
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30 (12) (2014)
Ilya Minkin, Anand Patel, Mikhail Kolmogorov, Nikolay Vyahhi, Son K. Pham
Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes. WABI (2013)
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. J. Comput. Biol. 20 (4) (2013)
Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner
From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. WABI (2012)
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. RECOMB (2012)
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. 19 (5) (2012)
Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. J. Comput. Biol. 18 (11) (2011)
Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. RECOMB (2011)
Son K. Pham, Pavel A. Pevzner
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments. Bioinform. 26 (20) (2010)