Alla L. Lapidus

Publication Activity (10 Years)

Years Active: 2009-2020
Publications (10 Years): 8

Top Topics

Shape Retrieval

Retrieval Process

Pipeline Architecture

Queries And Relevance Judgments

Top Venues

J. Comput. Biol.

Publications

Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. BMC Bioinform. 21 (1) (2020)
Alex L. Mitchell, Alexandre Almeida, Martin Beracochea, Miguel A. Boland, Josephine Burgin, Guy Cochrane, Michael R. Crusoe, Varsha Kale, Simon C. Potter, Lorna J. Richardson, Ekaterina A. Sakharova, Maxim Scheremetjew, Anton I. Korobeynikov, Alexander Shlemov, Olga Kunyavskaya, Alla L. Lapidus, Robert D. Finn
MGnify: the microbiome analysis resource in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
Metaviral SPAdes: assembly of viruses from metagenomic data. Bioinform. 36 (14) (2020)
Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla L. Lapidus
Extending rnaSPAdes functionality for hybrid transcriptome assembly. BMC Bioinform. (12) (2020)
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. BMC Bioinform. (12) (2020)
Vasily Ershov, Artem Tarasov, Alla L. Lapidus, Anton I. Korobeynikov
IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction. J. Comput. Biol. 26 (2) (2019)
Elena Bushmanova, Dmitry Antipov, Alla L. Lapidus, Vladimir Suvorov, Andrey D. Prjibelski
transcriptome assemblies. Bioinform. 32 (14) (2016)
Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
plasmidSPAdes: assembling plasmids from whole genome sequencing data. Bioinform. 32 (22) (2016)
Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinform. 31 (12) (2015)
Yana Safonova, Alla L. Lapidus, Jennie Lill
IgSimulator: a versatile immunosequencing simulator. Bioinform. 31 (19) (2015)
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30 (12) (2014)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20 (10) (2013)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB (2013)
Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky
Frameshift detection in prokaryotic genomic sequences. Int. J. Bioinform. Res. Appl. 5 (4) (2009)