Dmitry Antipov

Publication Activity (10 Years)

Years Active: 2012-2020
Publications (10 Years): 7

Top Topics

Global Alignment

Subgraph Isomorphism

Top Venues

J. Comput. Biol.

Publications

Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
Metaviral SPAdes: assembly of viruses from metagenomic data. Bioinform. 36 (14) (2020)
Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla L. Lapidus
Extending rnaSPAdes functionality for hybrid transcriptome assembly. BMC Bioinform. (12) (2020)
Tatiana Dvorkina, Dmitry Antipov, Anton I. Korobeynikov, Sergey Nurk
SPAligner: alignment of long diverged molecular sequences to assembly graphs. BMC Bioinform. (12) (2020)
Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey A. Gurevich
Versatile genome assembly evaluation with QUAST-LG. Bioinform. 34 (13) (2018)
Elena Bushmanova, Dmitry Antipov, Alla L. Lapidus, Vladimir Suvorov, Andrey D. Prjibelski
transcriptome assemblies. Bioinform. 32 (14) (2016)
Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner
hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinform. 32 (7) (2016)
Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
plasmidSPAdes: assembling plasmids from whole genome sequencing data. Bioinform. 32 (22) (2016)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20 (10) (2013)
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. J. Comput. Biol. 20 (4) (2013)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB (2013)
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. RECOMB (2012)
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. 19 (5) (2012)