Andrey D. Prjibelski

Publication Activity (10 Years)

Years Active: 2012-2020
Publications (10 Years): 7

Top Topics

Sequence Prediction

Evaluation Framework

Top Venues

J. Comput. Biol.

Publications

Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla L. Lapidus
Extending rnaSPAdes functionality for hybrid transcriptome assembly. BMC Bioinform. (12) (2020)
Olga Kunyavskaya, Andrey D. Prjibelski
SGTK: a toolkit for visualization and assessment of scaffold graphs. Bioinform. 35 (13) (2019)
Bahar Behsaz, Hosein Mohimani, Alexey A. Gurevich, Andrey D. Prjibelski, Mark F. Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner
De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. RECOMB (2019)
Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey A. Gurevich
Versatile genome assembly evaluation with QUAST-LG. Bioinform. 34 (13) (2018)
Elena Bushmanova, Dmitry Antipov, Alla L. Lapidus, Vladimir Suvorov, Andrey D. Prjibelski
transcriptome assemblies. Bioinform. 32 (14) (2016)
Alla Mikheenko, Gleb Valin, Andrey D. Prjibelski, Vladislav Saveliev, Alexey A. Gurevich
assembly evaluation. Bioinform. 32 (21) (2016)
Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner
Assembling short reads from jumping libraries with large insert sizes. Bioinform. 31 (20) (2015)
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30 (12) (2014)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20 (10) (2013)
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. 19 (5) (2012)