Anton I. Korobeynikov

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 11

Top Topics

Gel Electrophoresis

Top Venues

J. Comput. Biol.

Publications

Lorna J. Richardson, Ben Allen, Germana Baldi, Martin Beracochea, Maxwell L. Bileschi, Tony Burdett, Josephine Burgin, Juan Caballero, Guy Cochrane, Lucy J. Colwell, Tom Curtis, Alejandra Escobar-Zepeda, Tatiana A. Gurbich, Varsha Kale, Anton I. Korobeynikov, Shriya Raj, Alexander b Rogers, Ekaterina A. Sakharova, Santiago Sanchez, Darren J. Wilkinson, Robert D. Finn
MGnify: the microbiome sequence data analysis resource in 2023. Nucleic Acids Res. 51 (D1) (2023)
Dmitry Meleshko, Iman Hajirasouliha, Anton I. Korobeynikov
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies. Bioinform. 38 (1) (2021)
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. BMC Bioinform. 21 (1) (2020)
Alex L. Mitchell, Alexandre Almeida, Martin Beracochea, Miguel A. Boland, Josephine Burgin, Guy Cochrane, Michael R. Crusoe, Varsha Kale, Simon C. Potter, Lorna J. Richardson, Ekaterina A. Sakharova, Maxim Scheremetjew, Anton I. Korobeynikov, Alexander Shlemov, Olga Kunyavskaya, Alla L. Lapidus, Robert D. Finn
MGnify: the microbiome analysis resource in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. BMC Bioinform. (12) (2020)
Tatiana Dvorkina, Dmitry Antipov, Anton I. Korobeynikov, Sergey Nurk
SPAligner: alignment of long diverged molecular sequences to assembly graphs. BMC Bioinform. (12) (2020)
Vasily Ershov, Artem Tarasov, Alla L. Lapidus, Anton I. Korobeynikov
IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction. J. Comput. Biol. 26 (2) (2019)
Alexander Shlemov, Anton I. Korobeynikov
PathRacer: Racing Profile HMM Paths on Assembly Graph. AlCoB (2019)
Anastasiia Abramova, Anton I. Korobeynikov
Assessing the Significance of Peptide Spectrum Match Scores. WABI (2017)
Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner
hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinform. 32 (7) (2016)
Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner
metaSPAdes: A New Versatile de novo Metagenomics Assembler. RECOMB (2016)
Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner
Assembling short reads from jumping libraries with large insert sizes. Bioinform. 31 (20) (2015)
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30 (12) (2014)
Nina Golyandina, Anton I. Korobeynikov
Basic Singular Spectrum Analysis and forecasting with R. Comput. Stat. Data Anal. 71 (2014)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20 (10) (2013)
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genom. 14 (S-1) (2013)
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB (2013)
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
BayesHammer: Bayesian clustering for error correction in single-cell sequencing CoRR (2012)
Anton I. Korobeynikov
Consistency of Parametric MLE Under Mixed Case Interval Censoring. Commun. Stat. Simul. Comput. 41 (7) (2012)
Anton I. Korobeynikov
Computation- and Space-Efficient Implementation of SSA. CoRR (2009)