Yana Safonova

Publication Activity (10 Years)

Years Active: 2014-2021
Publications (10 Years): 7

Top Topics

Problems In Computational Biology

Automated Analysis

Sequenced Genomes

Small Disjuncts

Top Venues

IEEE Trans. Inf. Theory

Publications

Vinnu Bhardwaj, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova
Trace Reconstruction Problems in Computational Biology. IEEE Trans. Inf. Theory 67 (6) (2021)
Vinnu Bhardwaj, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova
Trace Reconstruction Problems in Computational Biology. CoRR (2020)
Vinnu Bhardwaj, Massimo Franceschetti, Ramesh Rao, Pavel A. Pevzner, Yana Safonova
Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species. PLoS Comput. Biol. 16 (4) (2020)
Alexander Shlemov, Sergey Bankevich, Andrey V. Bzikadze, Yana Safonova, Pavel A. Pevzner
Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. RECOMB (2017)
Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinform. 31 (12) (2015)
Yana Safonova, Anton Bankevich, Pavel A. Pevzner
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. J. Comput. Biol. 22 (6) (2015)
Yana Safonova, Alla L. Lapidus, Jennie Lill
IgSimulator: a versatile immunosequencing simulator. Bioinform. 31 (19) (2015)
Yana Safonova, Anton Bankevich, Pavel A. Pevzner
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. RECOMB (2014)