Mark Chaisson

Publication Activity (10 Years)

Years Active: 2004-2017
Publications (10 Years): 3

Top Topics

Labor Intensive

Small Disjuncts

Tandem Mass Spectra

Top Venues

Proc. Natl. Acad. Sci. USA

Publications

Mark Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler
Resolving Multicopy Duplications de novo Using Polyploid Phasing. RECOMB (2017)
Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Mark Chaisson, Pavel A. Pevzner
Assembly of long error-prone reads using de Bruijn graphs. Proc. Natl. Acad. Sci. USA 113 (52) (2016)
Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner
Assembly of Long Error-Prone Reads Using de Bruijn Graphs. RECOMB (2016)
Alexander Dobin, Carrie A. Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R. Gingeras
STAR: ultrafast universal RNA-seq aligner. Bioinform. 29 (1) (2013)
Mark Chaisson, Glenn Tesler
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR): Theory and Application. BMC Bioinform. 13 (2012)
Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. J. Comput. Biol. 18 (11) (2011)
Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. RECOMB (2011)
Mark Chaisson, Benjamin J. Raphael, Pavel A. Pevzner
Microinversions in mammalian evolution. Proc. Natl. Acad. Sci. USA 103 (52) (2006)
Mark Chaisson, Pavel A. Pevzner, Haixu Tang
Fragment assembly with short reads. Bioinform. 20 (13) (2004)