Nikita Alexeev

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 17

Top Topics

Phylogenetic Trees

Markov Chain Monte Carlo

Comparative Genomics

Top Venues

J. Comput. Biol.

Publications

Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
Orienting Ordered Scaffolds: Complexity and Algorithms. SN Comput. Sci. 3 (4) (2022)
Alexey Zabelkin, Yulia Yakovleva, Olga Bochkareva, Nikita Alexeev
PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinform. 38 (2) (2022)
Natalia Petukhova, Alexey Zabelkin, Vitaly Dravgelis, Sergey Aganezov, Nikita Alexeev
Chromothripsis Rearrangements Are Informed by 3D-Genome Organization. RECOMB-CG (2022)
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
A unified ILP framework for core ancestral genome reconstruction problems. Bioinform. 36 (10) (2020)
Nikita Alexeev, Javlon E. Isomurodov, Vladimir Sukhov, Gennady Korotkevich, Alexey A. Sergushichev
Markov chain Monte Carlo for active module identification problem. BMC Bioinform. (6) (2020)
Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz
Recovering rearranged cancer chromosomes from karyotype graphs. BMC Bioinform. (20) (2019)
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
Orienting Ordered Scaffolds: Complexity and Algorithms. CoRR (2019)
Alexey Zabelkin, Nikita Alexeev
Estimation of the True Evolutionary Distance Under the INFER Model. RECOMB-CG (2018)
Nikita Alexeev, Max A. Alekseyev
Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters. J. Comput. Biol. 25 (11) (2018)
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ. RECOMB-CG (2017)
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs. J. Comput. Biol. 24 (2) (2017)
Nikita Alexeev, Max A. Alekseyev
Combinatorial Scoring of Phylogenetic Networks. COCOON (2016)
Nikita Alexeev, Pavel Avdeyev, Max A. Alekseyev
Comparative genomics meets topology: a novel view on genome median and halving problems. BMC Bioinform. 17 (S-14) (2016)
Nikita Alexeev, Max A. Alekseyev
Combinatorial Scoring of Phylogenetic Networks. CoRR (2016)
Nikita Alexeev, Rustem Aidagulov, Max A. Alekseyev
A Computational Method for the Rate Estimation of Evolutionary Transpositions. IWBBIO (1) (2015)
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
Generalized Hultman Numbers and the Distribution of Multi-break Distances. AlCoB (2015)
Nikita Alexeev, Max A. Alekseyev
Estimation of the true evolutionary distance under the fragile breakage model. ICCABS (2015)
Nikita Alexeev, Peter Zograf
Random Matrix Approach to the Distribution of Genomic Distance. J. Comput. Biol. 21 (8) (2014)