Sing-Hoi Sze

Publication Activity (10 Years)

Years Active: 1997-2018
Publications (10 Years): 4

Top Topics

Protein Interaction Networks

Empirical Analyses

Top Venues

J. Comput. Biol.

ACM Trans. Algorithms

Publications

Sing-Hoi Sze, Craig D. Kaplan
Codon-Based Sequence Alignment for Mutation Analysis by High-Throughput Sequencing. ICCABS (2018)
Shuhua Fu, Peter L. Chang, Maren L. Friesen, Natasha L. Teakle, Aaron M. Tarone, Sing-Hoi Sze
Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in melilotus. ICCABS (2017)
Sing-Hoi Sze, Jonathan J. Parrott, Aaron M. Tarone
A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms. ICCABS (2016)
Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze
Parameterized and approximation algorithms for maximum agreement forest in multifurcating trees. Theor. Comput. Sci. 562 (2015)
Shuhua Fu, Aaron M. Tarone, Sing-Hoi Sze
Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data. ICCABS (2014)
Mu-Fen Hsieh, Sing-Hoi Sze
Finding Alignments of Conserved Graphlets in Protein Interaction Networks. J. Comput. Biol. 21 (3) (2014)
Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze
Parameterized and Approximation Algorithms for the MAF Problem in Multifurcating Trees. WG (2013)
Sing-Hoi Sze, Aaron M. Tarone
A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data. ICCABS (2013)
Jia-Hao Fan, Jianer Chen, Sing-Hoi Sze
Identifying Complexes from Protein Interaction Networks According to Different Types of Neighborhood Density. J. Comput. Biol. 19 (12) (2012)
Gangman Yi, Michael R. Thon, Sing-Hoi Sze
Supervised Protein Family Classification and New Family Construction. J. Comput. Biol. 19 (8) (2012)
Jianer Chen, Yang Liu, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang
Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching. ACM Trans. Algorithms 8 (1) (2012)
Xiaoyan Zhao, Sing-Hoi Sze
Motif Finding in DNA Sequences Based on Skipping Nonconserved Positions in Background Markov Chains. J. Comput. Biol. 18 (5) (2011)
Qingwu Yang, Gangman Yi, Fenghui Zhang, Michael R. Thon, Sing-Hoi Sze
Identifying Gene Clusters within Localized Regions in Multiple Genomes. J. Comput. Biol. 17 (5) (2010)
Mu-Fen Hsieh, Sing-Hoi Sze
Graphlet alignment in protein interaction networks. GENSiPS (2010)
Xiaoning Qian, Sing-Hoi Sze, Byung-Jun Yoon
Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models. J. Comput. Biol. 16 (2) (2009)
Qingwu Yang, Sing-Hoi Sze
Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements. BMC Bioinform. 9 (2008)
Yue Lu, Sing-Hoi Sze
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. J. Comput. Biol. 15 (7) (2008)
Yue Lu, Sing-Hoi Sze
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. RECOMB (2007)
Gangman Yi, Sing-Hoi Sze, Michael R. Thon
Identifying clusters of functionally related genes in genomes. Bioinform. 23 (9) (2007)
Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang
Improved algorithms for path, matching, and packing problems. SODA (2007)
Songjian Lu, Fenghui Zhang, Jianer Chen, Sing-Hoi Sze
Finding Pathway Structures in Protein Interaction Networks. Algorithmica 48 (4) (2007)
Qingwu Yang, Sing-Hoi Sze
Path Matching and Graph Matching in Biological Networks. J. Comput. Biol. 14 (1) (2007)
Yang Liu, Songjian Lu, Jianer Chen, Sing-Hoi Sze
Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms. IWPEC (2006)
Sing-Hoi Sze, Yue Lu, Qingwu Yang
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. J. Comput. Biol. 13 (2) (2006)
Sing-Hoi Sze, Xiaoyan Zhao
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences. Systems Biology and Regulatory Genomics (2005)
Sing-Hoi Sze, Yue Lu, Qingwu Yang
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. RECOMB (2005)
Sing-Hoi Sze, Songjian Lu, Jianer Chen
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. WABI (2004)
Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
Splicing graphs and EST assembly problem. ISMB (2002)
Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner
Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing (2002)
Pavel A. Pevzner, Sing-Hoi Sze
Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB (2000)
Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner
Algorithms and software for support of gene identification experiments. Bioinform. 14 (1) (1998)
Sing-Hoi Sze, Pavel A. Pevzner
Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB (1997)
Sing-Hoi Sze, Pavel A. Pevzner
Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. J. Comput. Biol. 4 (3) (1997)
Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim
Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics (1997)