A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data.

Sing-Hoi Sze Aaron M. Tarone

Published in: ICCABS (2013)

Keyphrases

memory efficient
graph structure
k means
data sets
memory space
statistical analysis
multiple sequence alignment
data sources
data collection
external memory
data processing
xml documents
data analysis
data structure
data mining techniques
clustering method
data model
weighted graph
spanning tree
high dimensional