Nuno Bandeira

Publication Activity (10 Years)

Years Active: 1983-2023
Publications (10 Years): 10

Top Topics

Mass Spectrometry

Global Optimality

High Dimensional Indexing

Top Venues

Nucleic Acids Res.

Publications

Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51 (D1) (2023)
Narangerelt Batsoyol, Benjamin S. Pullman, Mingxun Wang, Nuno Bandeira, Steven Swanson
P-Massive: A Real-Time Search Engine for a Multi-Terabyte Mass Spectrometry Database. SC (2022)
Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou
Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees. Theory Comput. Syst. 65 (1) (2021)
Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48 (Database-Issue) (2020)
Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou
Index-Based, High-Dimensional, Cosine Threshold Querying with Optimality Guarantees. ICDT (2019)
Nuno Bandeira, Lennart Martens
Computational Proteomics (Dagstuhl Seminar 19351). Dagstuhl Reports 9 (8) (2019)
Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou
Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees. CoRR (2018)
Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak, Yasset Pérez-Riverol, Tobias Ternent, David S. Campbell, Manuel Bernal Llinares, Shujiro Okuda, Shin Kawano, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaíno
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Nucleic Acids Res. 45 (Database-Issue) (2017)
Nuno Bandeira
Revealing deep proteome diversity with community-scale proteomics big data. CSBio (2017)
Sujun Li, Nuno Bandeira, XiaoFeng Wang, Haixu Tang
On the Privacy Risks of Sharing Clinical Proteomics Data. CRI (2016)
Adrian Guthals, Christina Boucher, Nuno Bandeira
The Generating Function Approach for Peptide Identification in Spectral Networks. J. Comput. Biol. 22 (5) (2015)
Adrian Guthals, Christina Boucher, Nuno Bandeira
The Generating Function Approach for Peptide Identification in Spectral Networks. RECOMB (2014)
Mingxun Wang, Nuno Bandeira
Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance. RECOMB (2013)
Kyowon Jeong, Sangtae Kim, Nuno Bandeira
False discovery rates in spectral identification. BMC Bioinform. 13 (S-16) (2012)
Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna
Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides. J. Comput. Biol. 19 (4) (2012)
Yoona Kim, Steven Bark, Vivian Hook, Nuno Bandeira
NeuroPedia: neuropeptide database and spectral library. Bioinform. 27 (19) (2011)
Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. RECOMB (2010)
Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna
Shared Peptides in Mass Spectrometry Based Protein Quantification. RECOMB (2009)
Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB (2008)
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner
De Novo Sequencing of Nonribosomal Peptides. RECOMB (2008)
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
Protein identification by spectral networks analysis. Proc. Natl. Acad. Sci. USA 104 (15) (2007)
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
A New Approach to Protein Identification. RECOMB (2006)
Nuno Bandeira, Ken Vaccaro, James A. Howard
A Two's Complement Array Multiplier Using True Values of the Operands. IEEE Trans. Computers 32 (8) (1983)