Michael J. MacCoss

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 5

Top Topics

Exploratory Analysis

Data Extraction

Top Venues

Nucleic Acids Res.

Publications

Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51 (D1) (2023)
Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48 (Database-Issue) (2020)
Tobias Rohde, Rita Chupalov, Nicholas Shulman, Vagisha Sharma, Josh Eckels, Brian S. Pratt, Michael J. MacCoss, Brendan MacLean
Audit logs to enforce document integrity in Skyline and Panorama. Bioinform. 36 (15) (2020)
Shannon Joyner, Michael J. MacCoss, Christina Delimitrou, Hakim Weatherspoon
Ripple: A Practical Declarative Programming Framework for Serverless Compute. CoRR (2020)
Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller
piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Daniel Broudy, Trevor Killeen, Meena Choi, Nicholas Shulman, Deepak R. Mani, Susan E. Abbatiello, Deepak Mani, Rushdy Ahmad, Alexandria K. Sahu, Birgit Schilling, Kaipo Tamura, Yuval Boss, Vagisha Sharma, Bradford W. Gibson, Steven A. Carr, Olga Vitek, Michael J. MacCoss, Brendan MacLean
A framework for installable external tools in Skyline. Bioinform. 30 (17) (2014)
William Stafford Noble, Michael J. MacCoss
Computational and Statistical Analysis of Protein Mass Spectrometry Data. PLoS Comput. Biol. 8 (1) (2012)
Sean McIlwain, Michael Mathews, Michael Bereman, Edwin W. Rubel, Michael J. MacCoss, William Stafford Noble
Estimating relative abundances of proteins from shotgun proteomics data. BMC Bioinform. 13 (2012)
Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L. Finney, Barbara Frewen, Randall Kern, David L. Tabb, Daniel C. Liebler, Michael J. MacCoss
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinform. 26 (7) (2010)
Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. ISMB (2008)
Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble
Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. RECOMB (2007)
Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra. CSB (2005)