Yunping Zhu

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 13

Top Topics

Tandem Mass Spectrometry

Highly Efficient

Top Venues

Nucleic Acids Res.

Publications

Jie He, Lei Yang, Yunping Zhu, Donglian Li, Zhixing Ding, Yuhuan Lu, Bocheng Liang, Shengli Li
Fetal Cardiac Structure Detection Using Multi-task Learning. ICIC (LNBI 2) (2024)
Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51 (D1) (2023)
Xiaojing Wu, Mingfei Han, Xinyu Song, Song He, Xiaochen Bo, Yunping Zhu
COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods. Bioinform. 39 (12) (2023)
Tao Chen, Jie Ma, Yi Liu, Zhiguang Chen, Nong Xiao, Yutong Lu, Yinjin Fu, Chunyuan Yang, Mansheng Li, Songfeng Wu, Xue Wang, Dongsheng Li, Fuchu He, Henning Hermjakob, Yunping Zhu
iProX in 2021: connecting proteomics data sharing with big data. Nucleic Acids Res. 50 (D1) (2022)
Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48 (Database-Issue) (2020)
Xian Liu, Mingfei Han, Chen Zhao, Cheng Chang, Yunping Zhu, Changhui Ge, Ronghua Yin, Yiqun Zhan, Changyan Li, Miao Yu, Fuchu He, Xiaoming Yang
KeggExp: a web server for visual integration of KEGG pathways and expression profile data. Bioinform. 35 (8) (2019)
Moucheng Yang, Tao Chen, Xuegong Zhou, Liang Zhao, Yunping Zhu, Lingli Wang
A Complete CPU-FPGA Architecture for Protein Identification with Tandem Mass Spectrometry. FPT (2019)
Jie Ma, Tao Chen, Songfeng Wu, Chunyuan Yang, Mingze Bai, Kunxian Shu, Kenli Li, Guoqing Zhang, Zhong Jin, Fuchu He, Henning Hermjakob, Yunping Zhu
iProX: an integrated proteome resource. Nucleic Acids Res. 47 (Database-Issue) (2019)
Chuang Li, Kenli Li, Tao Chen, Yunping Zhu, Qiang He
SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight. Bioinform. 35 (19) (2019)
Cheng Chang, Mansheng Li, Chaoping Guo, Yuqing Ding, Kaikun Xu, Mingfei Han, Fuchu He, Yunping Zhu
PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis. Bioinform. 35 (5) (2019)
Cheng Chang, Kaikun Xu, Chaoping Guo, Jinxia Wang, Qi Yan, Jian Zhang, Fuchu He, Yunping Zhu
PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data. Bioinform. 34 (20) (2018)
Chuang Li, Tao Chen, Qiang He, Yunping Zhu, Kenli Li
MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework. Bioinform. 33 (6) (2017)
Tao Chen, Mansheng Li, Qiang He, Lei Zou, Youhuan Li, Cheng Chang, Dongyan Zhao, Yunping Zhu
LiverWiki: a wiki-based database for human liver. BMC Bioinform. 18 (1) (2017)
Fan Zhang, Yunping Zhu, Tomonari Furukawa, Wanqing Song
Kinematic Analysis of a Partially Decoupled 3-DOF Parallel Wrist. J. Robotics 2015 (2015)
Tao Chen, Jie Zhao, Jie Ma, Yunping Zhu
Web Resources for Mass Spectrometry-based Proteomics. Genom. Proteom. Bioinform. 13 (1) (2015)
Cheng Chang, Jiyang Zhang, Mingfei Han, Jie Ma, Wei Zhang, Songfeng Wu, Kehui Liu, Hongwei Xie, Fuchu He, Yunping Zhu
SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods. Bioinform. 30 (4) (2014)
Wei Liu, Dong Li, Yunping Zhu, Hongwei Xie, Fuchu He
Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Pengyi Yang, Jie Ma, Penghao Wang, Yunping Zhu, Bing Bing Zhou, Jean Yee Hwa Yang
Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (5) (2012)
Hao Guo, Yunping Zhu, Dong Li, Fuchu He, Qijun Liu
Using NMFAS to identify key biological pathways associated with human diseases. ISB (2012)
Lin Hou, Lin Wang, Minping Qian, Dong Li, Chao Tang, Yunping Zhu, Minghua Deng, Fangting Li
Modular analysis of the probabilistic genetic interaction network. Bioinform. 27 (6) (2011)
Wanlin Liu, Dong Li, Qijun Liu, Yunping Zhu, Fuchu He
A novel parametric approach to mine gene regulatory relationship from microarray datasets. BMC Bioinform. 11 (S-11) (2010)
Xianming Wu, Songfeng Wu, Dong Li, Jiyang Zhang, Lin Hou, Jie Ma, Wanlin Liu, Daming Ren, Yunping Zhu, Fuchu He
based on codon pairs preference. BMC Bioinform. 11 (2010)
Qijun Liu, Zhenghua Wang, Hanchang Sun, Hao Guo, Wanlin Liu, Yunping Zhu
A Semiautomatic Method to Achieve Independent and Intact Gene Ontology Slim (InitGO) and its Cytoscape Plugin Implementation. BMEI (2009)
Tingting Zhou, Samuel K. F. Yung, Zhenghua Wang, Yunping Zhu
A New Recursive Approach for Reconstructing Metabolic Networks from KEGG. FCST (2009)
Jiyang Zhang, Jianqi Li, Xin Liu, Hongwei Xie, Yunping Zhu, Fuchu He
A nonparametric model for quality control of database search results in shotgun proteomics. BMC Bioinform. 9 (2008)
Xing-Ming Zhao, Ji-Xiang Du, Hong-Qiang Wang, Yunping Zhu, Yixue Li
A new technique for selecting features from protein sequences. Int. J. Pattern Recognit. Artif. Intell. 20 (2) (2006)
Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yunping Zhu
Tumor classification based on independent component analysis. Int. J. Pattern Recognit. Artif. Intell. 20 (2) (2006)
Wei Liu, Dong Li, Jiyang Zhang, Yunping Zhu, Fuchu He
: A novel network feature to evaluate the importance of proteins in signal transduction networks. BMC Bioinform. 7 (2006)
Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li
Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognit. Lett. 26 (15) (2005)
Huaiqun Guan, M. Waleed Gaber, Frank A. DiBianca, Yunping Zhu
CT reconstruction by using the MLS-ART technique and the KCD imaging system. IEEE Trans. Medical Imaging 18 (4) (1999)