Yi-Xue Li

Publication Activity (10 Years)

Years Active: 2003-2021
Publications (10 Years): 9

Top Topics

Gene Regulatory Networks

Gene Expression Datasets

Top Venues

BMC Syst. Biol.

J. Chem. Inf. Model.

Artif. Intell. Medicine

Publications

Quanxue Li, Wentao Dai, Jixiang Liu, Qingqing Sang, Yi-Xue Li, Yuan-Yuan Li
DysRegSig: an R package for identifying gene dysregulations and building mechanistic signatures in cancer. Bioinform. 37 (3) (2021)
Leilei Wu, Qinfang Deng, Ze Xu, Songwen Zhou, Chao Li, Yi-Xue Li
A novel virtual barcode strategy for accurate panel-wide variant calling in circulating tumor DNA. BMC Bioinform. 21 (1) (2020)
Wentao Dai, Quanxue Li, Bing-Ya Liu, Yi-Xue Li, Yuan-Yuan Li
Differential networking meta-analysis of gastric cancer across Asian and American racial groups. BMC Syst. Biol. 12 (4) (2018)
Quanxue Li, Junyi Li, Wentao Dai, Yi-Xue Li, Yuan-Yuan Li
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis. Artif. Intell. Medicine 77 (2017)
Yi-Xue Li
Whole genome sequencing of disease animal models. BIBM (2016)
Su-Juan Wu, Junyi Li, Mushui Cao, Jing Yang, Yi-Xue Li, Yuan-Yuan Li
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes. BMC Syst. Biol. 10 (S-3) (2016)
Jing Yang, Su-Juan Wu, Shao-You Yang, Jia-Wei Peng, Shi-Nuo Wang, Fu-Yan Wang, Yu-Xing Song, Ting Qi, Yi-Xue Li, Yuan-Yuan Li
DNetDB: The human disease network database based on dysfunctional regulation mechanism. BMC Syst. Biol. 10 (2016)
Wentao Dai, Aiping Wu, Liang-Xiao Ma, Yi-Xue Li, Taijiao Jiang, Yuan-Yuan Li
A novel index of protein-protein interface propensity improves interface residue recognition. BMC Syst. Biol. 10 (4) (2016)
Jing Yang, Su-Juan Wu, Yi-Xue Li, Yuan-Yuan Li
DSviaDRM: an R package for estimating disease similarity via dysfunctional regulation mechanism. Bioinform. 31 (23) (2015)
Huayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei, Yuan-Yuan Li, Yi-Xue Li
cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets. BMC Syst. Biol. 7 (S-2) (2013)
Shan Cong, Xiao-Tu Ma, Yi-Xue Li, Jing-Fang Wang
Structural Basis for the Mutation-Induced Dysfunction of Human CYP2J2: A Computational Study. J. Chem. Inf. Model. 53 (6) (2013)
Hui Yu, Kang Tu, Yi-Jie Wang, Jun-Zhe Mao, Lu Xie, Yuan-Yuan Li, Yi-Xue Li
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer. BMC Syst. Biol. 6 (2012)
Ying Wang, Xiaolin Wu, Dong-Qing Wei, Yi-Xue Li, Jing-Fang Wang
Autoinhibitory Mechanism for the Mutation-Induced Impaired FGF9 Signaling. J. Chem. Inf. Model. 52 (9) (2012)
Jue Li, Dong-Qing Wei, Jing-Fang Wang, Yi-Xue Li
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations. J. Chem. Inf. Model. 51 (12) (2011)
Ru-Dong Li, Yuan-Yuan Li, Lingyi Lu, Cong Ren, Yi-Xue Li, Lei Liu
An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis. BMC Syst. Biol. 5 (S-1) (2011)
Hui Yu, Bao-Hong Liu, Zhi-Qiang Ye, Chun Li, Yi-Xue Li, Yuan-Yuan Li
Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs. BMC Bioinform. 12 (2011)
Bao-Hong Liu, Hui Yu, Kang Tu, Chun Li, Yi-Xue Li, Yuan-Yuan Li
DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data. Bioinform. 26 (20) (2010)
Yixiang Shi, Yi-Xue Li, Yuan-Yuan Li
Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution. BMC Bioinform. 11 (S-11) (2010)
Yun-Qin Chen, Hui Yu, Yi-Xue Li, Yuan-Yuan Li
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation. BMC Bioinform. 11 (S-11) (2010)
Hui Yu, Fudong Yu, Guoqing Zhang, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, Yi-Xue Li
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels. Database J. Biol. Databases Curation 2009 (2009)
Su-Jun Li, Mao Peng, Hong Li, Boshu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li, Rong Zeng
Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Res. 37 (Database-Issue) (2009)
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi
protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Res. 36 (Database-Issue) (2008)
Bin Kang, Yuan-Yuan Li, Xiao Chang, Lei Liu, Yi-Xue Li
Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation. PLoS Comput. Biol. 4 (3) (2008)
Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. BMC Bioinform. 8 (2007)
Jing Zhao, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li
Modular co-evolution of metabolic networks. BMC Bioinform. 8 (2007)
Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li
Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Comput. Biol. 2 (7) (2006)
Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu
Comparison of Modularization Methods in Application to Different Biological Networks. VDMB (2006)
Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan-Yuan Li, Qing-ming Luo, Yike Guo, Yi-Xue Li
KDE Bioscience: Platform for bioinformatics analysis workflows. J. Biomed. Informatics 39 (4) (2006)
Jing Zhao, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li
Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinform. 7 (2006)
Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li
discovery of human natural antisense transcripts. BMC Bioinform. 7 (2006)
Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li
Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Comput. Biol. 2 (8) (2006)
Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yunping Zhu
Tumor classification based on independent component analysis. Int. J. Pattern Recognit. Artif. Intell. 20 (2) (2006)
Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li
Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinform. 21 (16) (2005)
Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Boshu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong
MPSS: an integrated database system for surveying a set of proteins. Bioinform. 21 (9) (2005)
Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li
Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognit. Lett. 26 (15) (2005)
Yong Deng, Qi Liu, Yi-Xue Li
Scoring hidden Markov models to discriminate -barrel membrane proteins. Comput. Biol. Chem. 28 (3) (2004)
Qi Liu, Yisheng Zhu, Baohua Wang, Yi-Xue Li
Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure. Comput. Biol. Chem. 27 (3) (2003)
Qi Liu, Yisheng Zhu, Baohua Wang, Yi-Xue Li
A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins. Comput. Biol. Chem. 27 (1) (2003)