Tieliu Shi

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 11

Top Topics

Drosophila Melanogaster

Interactive Visualization

Protein Function

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Jun Wu, Haipeng Qing, Jian Ouyang, Jiajia Zhou, Zihao Gao, Christopher E. Mason, Zhichao Liu, Tieliu Shi
HiFun: homology independent protein function prediction by a novel protein-language self-attention model. Briefings Bioinform. 24 (5) (2023)
Jun Wu, Jian Ouyang, Haipeng Qing, Jiajia Zhou, Ruth Roberts, Rania Siam, Lan Wang, Weida Tong, Zhichao Liu, Tieliu Shi
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model. Bioinform. 39 (11) (2023)
Xiangjun Ji, Junwei Cai, Lixin Liang, Tieliu Shi, Jinghua Liu
Gene expression variability across cells and species shapes the relationship between renal resident macrophages and infiltrated macrophages. BMC Bioinform. 24 (1) (2023)
Yiheng Lan, Ruikun Sun, Jian Ouyang, Wubing Ding, Min-Jun Kim, Jun Wu, Yuhua Li, Tieliu Shi
AtMAD: Arabidopsis thaliana multi-omics association database. Nucleic Acids Res. 49 (Database-Issue) (2021)
Wubin Ding, Jiwei Chen, Guoshuang Feng, Geng Chen, Jun Wu, Yongli Guo, Xin Ni, Tieliu Shi
DNMIVD: DNA methylation interactive visualization database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Xin Li, Yunxiang Liang, Dongming Guo, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi
PedAM: a database for Pediatric Disease Annotation and Medicine. Nucleic Acids Res. 46 (Database-Issue) (2018)
Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Yunxiang Liang, Dongming Guo, Xin Li, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi
eRAM: encyclopedia of rare disease annotations for precision medicine. Nucleic Acids Res. 46 (Database-Issue) (2018)
Lin Huang, Duoli Xie, Yiran Yu, Huanlong Liu, Yan Shi, Tieliu Shi, Chengping Wen
TCMID 2.0: a comprehensive resource for TCM. Nucleic Acids Res. 46 (Database-Issue) (2018)
Qi Lv, Yiheng Lan, Yan Shi, Huan Wang, Xia Pan, Peng Li, Tieliu Shi
AtPID: a genome-scale resource for genotype-phenotype associations in Arabidopsis. Nucleic Acids Res. 45 (Database-Issue) (2017)
Ruifang Cao, Yan Shi, Shuangguan Chen, Yimin Ma, Jiajun Chen, Juan Yang, Geng Chen, Tieliu Shi
dbSAP: single amino-acid polymorphism database for protein variation detection. Nucleic Acids Res. 45 (Database-Issue) (2017)
Yu Du, Tieliu Shi
Ligand cluster-based protein network and ePlatton, a multi-target ligand finder. J. Cheminformatics 8 (1) (2016)
Peng Li, Yongrui Liu, Huan Wang, Yuan He, Xue Wang, Yundong He, Fang Lv, Huaqing Chen, Xiufeng Pang, Mingyao Liu, Tieliu Shi, Zhengfang Yi
PubAngioGen: a database and knowledge for angiogenesis and related diseases. Nucleic Acids Res. 43 (Database-Issue) (2015)
Pengzhan Hu, Zhongchao Shen, Haibo Tu, Li Zhang, Tieliu Shi
Integrating multiple resources to identify specific transcriptional cooperativity with a Bayesian approach. Bioinform. 30 (6) (2014)
Ruichao Xue, Zhao Fang, Meixia Zhang, Zhenghui Yi, Chengping Wen, Tieliu Shi
TCMID: traditional Chinese medicine integrative database for herb molecular mechanism analysis. Nucleic Acids Res. 41 (Database-Issue) (2013)
Feng Xu, Chen Zhao, Yuhua Li, Jiang Li, Youping Deng, Tieliu Shi
Exploring virus relationships based on virus-host protein-protein interaction network. BMC Syst. Biol. 5 (S-3) (2011)
Peng Li, Weidong Zang, Yuhua Li, Feng Xu, Jigang Wang, Tieliu Shi
. Nucleic Acids Res. 39 (Database-Issue) (2011)
Jigang Wang, Xiaojie Qiu, Yuhua Li, Youping Deng, Tieliu Shi
A transcriptional dynamic network during Arabidopsis thaliana pollen development. BMC Syst. Biol. 5 (S-3) (2011)
Lishan Wang, Yuanyuan Xiong, Yihua Sun, Zhaoyuan Fang, Li Li, Hongbin Ji, Tieliu Shi
HLungDB: an integrated database of human lung cancer research. Nucleic Acids Res. 38 (Database-Issue) (2010)
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi
protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Res. 36 (Database-Issue) (2008)
Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinform. 8 (2007)
Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families. PLoS Comput. Biol. 2 (8) (2006)
Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li
Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinform. 7 (2006)
Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li
Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinform. 21 (16) (2005)