PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.
Jun WuJian OuyangHaipeng QingJiajia ZhouRuth RobertsRania SiamLan WangWeida TongZhichao LiuTieliu ShiPublished in: Bioinform. (2023)
Keyphrases
- language model
- language modeling
- escherichia coli
- mass spectrometry
- probabilistic model
- document retrieval
- speech recognition
- sequence alignment
- n gram
- query expansion
- language modelling
- test collection
- vector space model
- regulatory networks
- information retrieval
- retrieval model
- smoothing methods
- gene expression
- mixture model
- ad hoc information retrieval
- language model for information retrieval
- statistical language models
- translation model
- protein sequences
- amino acids
- context sensitive
- microarray
- natural language processing
- statistical machine translation
- protein protein interactions
- document ranking
- query specific
- retrieval effectiveness
- query terms
- language models for information retrieval