An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences.
Rupali PatwardhanHaixu TangSun KimMehmet M. DalkilicPublished in: VDMB (2006)
Keyphrases
- motif discovery
- biological sequences
- protein sequences
- computational biology
- sequence analysis
- sequence databases
- motif finding
- dna sequences
- sequence data
- multiple sequence alignment
- protein classification
- protein structure
- molecular biology
- pattern discovery
- binding sites
- biological data
- multiobjective optimization
- random walk
- multiple alignment
- sequence alignment
- data mining tasks
- secondary structure
- data mining algorithms
- similarity search
- high dimensional data
- graph theory
- amino acids
- data analysis