Aleksey V. Zimin

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 5

Top Topics

Genomic Sequences

Escherichia Coli

Top Venues

PLoS Comput. Biol.

J. Open Source Softw.

Publications

Alina Guo, Steven L. Salzberg, Aleksey V. Zimin
JASPER: A fast genome polishing tool that improves accuracy of genome assemblies. PLoS Comput. Biol. 19 (3) (2023)
Aleksey V. Zimin, Steven L. Salzberg
The SAMBA tool uses long reads to improve the contiguity of genome assemblies. PLoS Comput. Biol. 18 (2) (2022)
Christopher Pockrandt, Aleksey V. Zimin, Steven L. Salzberg
Metagenomic classification with KrakenUniq on low-memory computers. J. Open Source Softw. 7 (80) (2022)
Aleksey V. Zimin, Steven L. Salzberg
The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies. PLoS Comput. Biol. 16 (6) (2020)
Guillaume Marçais, Arthur L. Delcher, Adam M. Phillippy, Rachel Coston, Steven L. Salzberg, Aleksey V. Zimin
MUMmer4: A fast and versatile genome alignment system. PLoS Comput. Biol. 14 (1) (2018)
Aleksey V. Zimin, Guillaume Marçais, Daniela Puiu, Michael Roberts, Steven L. Salzberg, James A. Yorke
The MaSuRCA genome assembler. Bioinform. 29 (21) (2013)
Aleksey V. Zimin, Douglas R. Smith, Granger G. Sutton, James A. Yorke
Assembly reconciliation. Bioinform. 24 (1) (2008)